New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3584195	NA (NA)	18 (1.160)	11/308	0.2	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4544735 =	0 (0.000)					coding (432/726 nt)	fimC	type 1 fimbriae periplasmic chaperone

ATGCCGATGGTGTAAAGGATGGTCGTTTTATCGTGACGCCTCCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTACGTATTCTTGATGCAACAAATAACCAATTGCCACAGGACCGGGAAAGTTTATTCTGGATGAACGTTAAAGCGATTCCGTCAATGGATAAATCAAAATTGACTGAGAATACGCTACAGCTCGCAATTATCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCACGGTTAAATTGCCTTCTGA  >  NC_000913/4544527‑4544950                                                                                                                                                                                                                 |                                                                                                                                                                                                                        gctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcagcataacctgaatctgaggcagcacctggcacgactgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTg                                                                                                                                                                               <  1:345521‑M2/43‑1 (MQ=255)            cccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATc                                                                                                                                                                     >  1:4943‑M2/198‑250 (MQ=255)                                                          ncgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTtc                                                                                                                                             >  1:223874‑M2/152‑228 (MQ=255)                                                          gcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggcagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggccttatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATc                                                                                                                                                                     >  1:306521‑M2/152‑204 (MQ=255)                                                           cgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCg                                                                                                                                                                                  >  1:25081‑M2/151‑190 (MQ=255)                                                                      gcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCg                                                                                                          >  1:272710‑M2/140‑251 (MQ=255)                                                                           ncctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGACGTAGCGCGAATTCTCTGACGCTGATTAAcc                                                                                                            >  1:92644‑M2/135‑244 (MQ=255)                                                                                                tggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTntcgnnnnnctnnnnnnnnnn                                                                                                                                                                                 >  2:213503‑M2/114‑144 (MQ=255)                                                                                                    acggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaccataacacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTg                                                                            >  1:160032‑M2/110‑251 (MQ=255)                                                                                                          gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATg                                                                        <  1:136556‑M2/146‑1 (MQ=255)                                                                                                            gacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCcgn                                                                    <  1:213503‑M2/150‑2 (MQ=255)                                                                                                                   gacgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaagaagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCTACCCGATCAgg                                                                                                                                                                  <  1:349180‑M2/56‑1 (MQ=255)                                                                                                                                          tggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTgan                                                                                         <  1:84774‑M2/129‑2 (MQ=255)                                                                                                                                             ngctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCCTTAAACTGAACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAACAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAAAATGCATTGGTGCCTcc                                   >  1:33537‑M2/69‑251 (MQ=255)                                                                                                                                                                 gggcattatctgaacataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTACCGCCCTGCTAAATTAGCTTGGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACTCCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAAAATGc                                               <  1:188849‑M2/171‑1 (MQ=255)                                                                                                                                                                           ngaacataaaacactatcaataagttggagtcattacaCCGCCGCATTAAACTGTACTATCACACGGCTAAATTAGCGTTGCCCCACAATCAGGCCGCAGAAAATTTAAGATTTCGTCGTAgcgc                                                                                                                                   >  1:33788‑M2/39‑125 (MQ=255)                                                                                                                                                                              acataaaacactatcaataagttggagtcattaccCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATACCGGAACCCGTGTTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCACGGTTAAATTGCCTTCTGa  <  1:309069‑M2/216‑1 (MQ=255)                                                                                                                                                                              acataaaacactatcaataaggtggagtcattaccCAGCCGCATTAATCTGTACGAGCGCCCGGCGAAATTAGCGTTGCCACCCGAGCAGGCCGCAGAAAAATTAAGATTTCGGCGTAGCTCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGTCGGAGCCCGTTTTCTGTAATATGCATTGGTTCCTCCAATGGGCGAAAGCACGGTTAAATTGCCTTCTGa  <  1:135371‑M2/216‑1 (MQ=255)                                                                                                                                                                                                             tnnccAGCCNNATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATtctc                                                                                                                           <  2:4943/95‑1 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                        ATGCCGATGGTGTAAAGGATGGTCGTTTTATCGTGACGCCTCCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTACGTATTCTTGATGCAACAAATAACCAATTGCCACAGGACCGGGAAAGTTTATTCTGGATGAACGTTAAAGCGATTCCGTCAATGGATAAATCAAAATTGACTGAGAATACGCTACAGCTCGCAATTATCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCACGGTTAAATTGCCTTCTGA  >  NC_000913/4544527‑4544950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.