| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,082,106 | G→A | G218G (GGC→GGT) | fdoH ← | formate dehydrogenase O subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,082,106 | 0 | G | A | 93.8% | 36.4 / ‑6.8 | 16 | G218G (GGC→GGT) | fdoH | formate dehydrogenase O subunit beta |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/11); minor base T (0/1); total (4/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
CATCCGCACGGTTCGGACCGACACCCACGTAGTGGAAGATACTGGCCGCAAAGGTAGCCGCAAAGCCAACAGCCGCGAGCGGTTTCCAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACGCCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCAGGCTGGTTCTTGCCCAACCACCACGCGGTCAACGCACAGCGTACATTTGTAGACGCGGTTGTCTTCCGGGTTGAGGCGCGGAATGTCGAACGGACAGCCCGC > NC_000913/4081904‑4082339 | cATCCGCACGGTGCGGACCGACACCCACGTAGTGGAAGATACTGGCCGCAAAGGTAGCCGCAAAGCCATCAGCCGCGAGCGGTTTCCAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTtcan < 1:36103/250‑2 (MQ=255) cccACGTAGTGGAAGATACTGGCCGCAAAGGTAGCCGCAAAGCCAACAGCCGCGAGCGGTTTCCAGATGCCTTTCCAGAATTTCGCGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGcc > 1:4391/1‑249 (MQ=255) ggCCGCAAAGGTAGCCGCAAAGCCAACAGCCGCGAGCGGTTTCCAGATGCCTTTCCAGAAGTTCACGGTTTCGCTGATTGCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCTCGTACATGACGTGTGTACCGCCGACTCCTGCGGGATCGTACAGACCCTCATTGGCGTAATCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCg < 1:357679/251‑1 (MQ=255) ggTAGCCGCAAAGCCAACAGCCGCGAGCGGTTTCCAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGt < 1:111224/251‑1 (MQ=255) gCCGCAAAGCCAACAGCCGCGGGCGGTTTCCAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGt < 1:133987/239‑1 (MQ=255) ggTTTCCAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCAc < 1:109445/251‑1 (MQ=255) ccAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCAgn < 1:85740/251‑2 (MQ=255) ccAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTTCCTAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCAGGCTGGTTCTTGc < 1:353251/250‑1 (MQ=255) aCGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGTTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGAGTTTTCATCGACTCTTTTGTACCGAAGGGAATCGCGCCCGTTGGGCAGGTCTTCACGCAGGCTGGTTCTTGCCCACCcaccac > 1:143875/1‑251 (MQ=255) gggTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCAGGCTGGTTCTTGCCCATCCACCACGCGGTCAACGCACAGCGt < 1:283349/251‑1 (MQ=255) ccGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGGGAATCGCGCCCGTTGGGCAGGTCTTCTCGCAGGCTGGTTCTTGCCCAACCACCACGCGGTCAACGCACAGCGTACATTTg < 1:230522/251‑1 (MQ=255) aaGCCATGATACAGAGGTGGCTTGTCAGCATGGTGCAGCACGGACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGGATTGTCGGAACCGCGGGTGTTCAGCTCAGCAACGCGCTCGCTCGCCAg < 1:346766/137‑1 (MQ=255) gCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCa > 1:148428/1‑195 (MQ=255) gATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGGAACCGCGGGTTTGCAGCTCAGCAAcg < 1:95603/110‑1 (MQ=255) naTGACGTGTGTACCACCGACACCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCAGGCTGGTTCTTGCCCAACCACCAcg > 1:33265/2‑178 (MQ=255) aCGTGTGTACCCCCGCCACCTGCCGGATCGTACAGACCCTCATTGTCGTACCCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCTTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTTTGCAGGCCTTCACGCATGCTGGTTCTTGCCCAGCCACCACTCTGCCAACGCACAGCGTACATTTTTAGCCGCGGTTGTCTGCCGGTTTGAGGCGCGGAATGTCGAACGGACAGCCCgc < 1:266464/251‑1 (MQ=255) | CATCCGCACGGTTCGGACCGACACCCACGTAGTGGAAGATACTGGCCGCAAAGGTAGCCGCAAAGCCAACAGCCGCGAGCGGTTTCCAGATGCCTTTCCAGAATTTCACGGTTTCGCTGATTTCCGGGTTCTCCGGCAAGCCATGATACAGATTTGGCTTGTCAGCATGGTGCAGCACGTACATGACGTGTGTACCACCGACGCCTGCCGGATCGTACAGACCCGCATTGTCGTAACCGCGGGTTTTCAGCTCAGCAACGCGCTCGCTCGCCAGCGTTTTCATCGACTCTTTCGTACCGAAGTGAATCGCGCCCGTTGGGCAGGTCTTCACGCAGGCTGGTTCTTGCCCAACCACCACGCGGTCAACGCACAGCGTACATTTGTAGACGCGGTTGTCTTCCGGGTTGAGGCGCGGAATGTCGAACGGACAGCCCGC > NC_000913/4081904‑4082339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |