| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,587,112 | 0 | C | T | 90.9% | 25.0 / ‑5.8 | 12 | A461V (GCA→GTA) | narQ | sensor histidine kinase NarQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/5); minor base G (1/0); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATGAAGCACGCCAACGCCAGCGAAATCGCCGTCAGTTGCGTCACCGCGCCGGACGGCAATCACACGGTTTATATCCGTGATAACGGGATTGGTATCGGTGAACCGAAAGAACCCGAAGGTCATTATGGTCTGAATATCATGCGCGAACGCGCGGAACGGCTAGGTGGGACGCTGACTTTTTC > NC_000913/2586926‑2587355 | aaaGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATg < 1:26370/251‑1 (MQ=255) cgNNNNNTTGNCTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGTACTGGATGCGCa < 2:221886/144‑1 (MQ=255) ctTTCCGCCTGACGCTGCAGCAGGCGGATCTCCACTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAAACAGCGCCAAACTGACCCTCGACTGACGTCTGCCAACCCTGGGACTg > 1:806/1‑122 (MQ=255) nggATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGCCCCTCGACTGCCGTCTGCCAACCCTGGACCTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATGAAGCACGCCAACGCCAGCGAAATc > 1:64786/2‑182 (MQ=255) ctcCCCTCCGCTTTGAGGGAAATGATGGATACGTTACAAAAACAAACCCGCGACAACCTGACCCTAGACTGCCGTCTGCCACCAATGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTTGCGAAGCGGTGCTGAATGCGa > 1:227222/1‑151 (MQ=255) ncccTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATGAAGCacgccaacgc > 1:87417/2‑165 (MQ=255) aaCCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGTTGGATGCGATGAAGCTCGCCATCGCCAGCGAAATCGCCGTCAGTTGCTTCACTGCGCCGGACGTCAATCTCTCGTTTTATATCCGTGATAACGGGATTGGTATCGGTGAACCGAAAGAACCCGAAGGTCATTATGGTCTGAat < 1:355372/241‑1 (MQ=255) cAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAANNGGTGCt > 2:17544/1‑96 (MQ=255) cAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATGAAGCACGCCAACGCCAGCGAAATCGCCGTCAGTTGCGTCACCGCGCCGGACGGCAATCACACGGTTTATATCCGt < 1:17544/181‑1 (MQ=255) ccAACCCTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATGAAGCACGCCAACGCCAGCGAAATCGCGGTCAGTTGCGTCACCGCGCCGGACGGCACTCACACGGTTTATATCCGTGATAACGGGATTGGTATCGGTGAACCGAAAGAACCCGAAGGGCATTATGGTCTGAATATCATGCGCGAACGCGCGGAACGGCTAGGTGGGACGCTGACttt > 1:268698/1‑251 (MQ=255) ccccTGGTACTGGATGCGCAAATGCAGTTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATTCTATGAATCACGCCAACGCCAGCGAAATCGCCGTCAGTTGCGTCTCCGCGCCGGACGGCAATCACACGGTTTATATCCGTGATAACGGGATTGGTATCGGTTAACCGAAAGAACCCGAAGGTCATTATGGTCTTAATATCATGCGCGAACGCGCGGAACGGCTAGGGGGGACGCTGACTTTTTc < 1:74818/250‑1 (MQ=255) ccTGGTACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGATGAATGCGATGAAGCACGCCAACGACAGCGAAATCGCAGTCAGTTGCGTCACCGCGCCGGAAGGCCATCACCCGGTTTATATCCGTGCTAACGGGATTGGTATCGGTGAACCGAACGAACCCGAAGGTCATTATGGTCTGAATCTCATGCGCGAACGCGCGGACCGGCTGGGt > 1:253383/1‑232 (MQ=255) | AAAGTATCATGGCCGATTTTTCCCAGGCGTTGAATGATGCTTATCGGCAGTTACGCGAGCTGTTGACTACTTTCCGCCTGACGCTGCAGCAGGCGGATCTCCCCTCCGCATTGAGGGAAATGCTGGATACGTTACAAAATCAAACCAGCGCCAAACTGACCCTCGACTGCCGTCTGCCAACCCTGGCACTGGATGCGCAAATGCAGGTGCATTTGTTGCAAATTATTCGCGAAGCGGTGCTGAATGCGATGAAGCACGCCAACGCCAGCGAAATCGCCGTCAGTTGCGTCACCGCGCCGGACGGCAATCACACGGTTTATATCCGTGATAACGGGATTGGTATCGGTGAACCGAAAGAACCCGAAGGTCATTATGGTCTGAATATCATGCGCGAACGCGCGGAACGGCTAGGTGGGACGCTGACTTTTTC > NC_000913/2586926‑2587355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |