New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978483	0 (0.000)	24 (1.540)	23/308	0.0	100%	intergenic (‑286/+35)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB
	?	NC_000913	= 2070271	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

CATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTG  >  NC_000913/2070063‑2070472                                                                                                                                                                                                                 |                                                                                                                                                                                                          cATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAATACATCAATCATCTGTTCTCCAATGACTAGTCTAAAATCTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTTTCTGGAGATTCATGGCTCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTc                                                                                                                                                                 <  1:45418/251‑1 (MQ=255) cATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTc                                                                                                                                                                 >  1:79159/1‑251 (MQ=255)          gggCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCa                                                                                                                                                                                                >  1:316989/1‑211 (MQ=34)          gggCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTACTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACCATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTa                                                                                                                                                         >  1:359873/1‑250 (MQ=255)                                                    gAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCAtcctcn                                                                                                                                                                                          <  1:91698/175‑2 (MQ=39)                                                                                          cGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGGGATTCAGGGGGCCAGTCTAGTGGCGAATCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAgcn                                                                                                                                              <  1:41649/181‑2 (MQ=255)                                                                                             ttCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGTAGATAATTATGGTGTGGGACTGTTGATAGATGAGGCTGCGCTGGAGCGTGTGGAGGTAGTGAAAgg                                                                      <  1:125485/250‑1 (MQ=255)                                                                                                                    catcTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCGCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTc                                              <  1:164912/251‑1 (MQ=255)                                                                                                                       ntGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTAATCTACATGATATTGGTCGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTATTTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGACAGATGAGTCTGCGCTGGAGCGTGCTGAGGTAGTGAAAGGTCCATATTCAGTACTGTACGGTTcac                                            >  1:36063/2‑250 (MQ=38)                                                                                                                               caattattAGTCTAAAAAGTTGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTTTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACGGTTGATAGATGAGTCTGCGCTGGAGTGTGTTGAGGTAGTGAAAGGTCCATATTCCGGACTGTACGGTTCACAGGCAATTg                                   <  1:249927/244‑1 (MQ=38)                                                                                                                                          cTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGGTTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTATCATTGATGGTCAGGAGGTAAATTCTCAGCGAGCCGGGGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGa                                                                                  >  1:320938/1‑193 (MQ=37)                                                                                                                                                                 cACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGCGGGCCAGTCTAGTGCAGAAGCATCCTCCCGAGCTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGCGCTAATTATGGTGTGGGACTGTTGATAGCTGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTg  >  1:331342/1‑250 (MQ=255)                                                                                                                                                                                     gTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTTATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTNCGCNNNNNCgnnnnnn                                                                                  >  2:210080/1‑144 (MQ=255)                                                                                                                                                                                                               cTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGTGGAAACTTATCCGCGCGCCGGAGATACTTATTGTGTGGGACTGTTGATAGATGAGTATGCGCTGGAGCGTGTTGCGGTAGTGAACGGTCCATATTGCGTTCTGTACgg                                                 >  1:344937/1‑157 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                          CATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATTCCGTACTGTACGGTTCACAGGCAATTGGCGGTATTGTTAACTTCATCACCAAAAAGGGTG  >  NC_000913/2070063‑2070472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.