| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 298,885 | G→A | P684S (CCG→TCG) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 298,885 | 0 | G | A | 90.0% | 20.5 / NA | 10 | P684S (CCG→TCG) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (6/3); minor base C (1/0); total (7/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGTATGACATTGTTCCTCCTTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTT > NC_000913/298715‑299076 | cGGGTATGACATTGTTCCTCCTTCAACCACATACGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGAGGAGGATATGGGGTCGGTATCATCGAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCCTAccccc > 1:123307/1‑250 (MQ=255) aGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGACTACCGGCGACGTTATACAACGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGAGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCTGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATc > 1:200625/1‑251 (MQ=255) ncTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTCTACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGAGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGTGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGctcc > 1:40785/2‑251 (MQ=255) tATCCNNAGNNNTGNNATAATCCCGTACCCGAATACCGGNGGCGTTATACACCGCGTTGGCGATAGCCGNGNTNACGCNNCACNGGCTCAGCTANCCGACACCTTTGGCCTTCATCGAGGAGGATATGGGGTCGGGATCATCCNGNAAAATCACCTCCTGTTTTGGGATATCCGCATNAACCGGCACCTCATAcc > 2:255973/1‑195 (MQ=255) tATCCAGAGTGATGGGATAATCCCGTACCCGCATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACCCCTTTGGCCTTCATCGAGTAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATAcc < 1:255973/195‑1 (MQ=255) ccAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCCCGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGCGGAGGCTATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCAc > 1:241677/1‑184 (MQ=255) cacttcgtggtcGATAGCCGTGCTCACGCCGCACAGGCCCAGTTCACCTACACCTTGGTCCTTCCTCGAGGAGGATATGGGGGCGGTAGCATCCAGGAAAATCACCTCCTGTTTTGGGat < 1:228451/109‑1 (MQ=255) cgTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGATCACCGACACCTTTTGCCTTCATCGAAGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTgcgcgc > 1:183091/1‑250 (MQ=255) ncGATAGCCGCGCTCACGCCGCACAGGCACAGCTCACCGACACCTTTGGCCTTCATCGAGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGttt > 1:285883/2‑250 (MQ=255) ctcgcgccgcACAGGCCCAGCTCGCCGACGCCGTTGGCCGTCATCGAGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTgggn < 1:38999/93‑2 (MQ=255) | CGGGTATGACATTGTTCCTCCTTAAACCACATCCGGCAGCTTATCGAGCAGCTTATCCAGAGTGATGGGATAATCCCGTACCCGAATACCGGTGGCGTTATACACCGCGTTGGCGATAGCCGCGCTCACGCCGCACAGGCCCAGCTCACCGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGACCTGGCTGCGCGCAGTTT > NC_000913/298715‑299076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |