| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,038,477 | 2 bp→AA | coding (738‑739/1545 nt) | appC → | cytochrome bd‑II subunit 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,038,477 | 0 | G | A | 92.9% | 31.8 / NA | 14 | A246A (GCG→GCA) | appC | cytochrome bd‑II subunit 1 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (6/7); minor base C (1/0); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 1,038,478 | 0 | C | A | 92.9% | 34.4 / ‑5.5 | 14 | Q247K (CAA→AAA) | appC | cytochrome bd‑II subunit 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (6/7); minor base T (1/0); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCAGGTGAAATTTGTGCACACCGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCGCAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGATCAAGAGCGTAACGCCTTTGCCCTCAAAATTCCCGCGCTGCTAGGGATCCTCGCCACTCACTCATTAGATAAACCCGTGCCGGGTCTGAAGAATTTGATGGCTGAAACCTACCCACGCTTGCAACGCG > NC_000913/1038278‑1038700 || nccAGGTGAAATTTGTGCACACCGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCCGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGGAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGa > 1:35225/2‑250 (MQ=255) cacCGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTAGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTgg < 1:341299/203‑1 (MQ=255) cGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGcc < 1:295180/249‑1 (MQ=255) gTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCATAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGACAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGAACAAGAGc > 1:347716/1‑251 (MQ=255) gCGATCAGCGCCTGGTCTTTACTGCGCGGACGGGAGCGAAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGAACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACAGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCAtg > 1:125512/1‑211 (MQ=255) gCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAacctgcacctg > 1:25636/1‑154 (MQ=255) cGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGATCAAGAGCGTAACGCCTTTGCCCTCAAAATTCCCGCGCTGCTAGGGATCCTCGCCACTCACTCATTAGATAAACCCGTGCCGGGTCTg > 1:123259/1‑250 (MQ=255) gTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGATCAAGAGCGTAACGCCTTTGCCCTCAAAATTCCCGCGCTGCTAGGGATCCTCGCCACTCGCTCATTAGATAAACCCGTGCCGGGTCTGAAGAATTTg < 1:332014/251‑1 (MQ=255) cGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTCTGAAGTCGCCAAAGAACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGACGGACCAGGATCAAGAGCGTAACGCCTTTGCCCTCAAAATTCCCGCGCTGCTAGGGATCCTCGCCACTCACTCATTAGATAAAACCGTGCCGGGTCTGAAGAATTTGATGGCTGa > 1:267236/1‑250 (MQ=255) aTTATCGGTACCCTGCAACTCGGTGACAGTTATGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACGGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGATCAAGAGCGTAACGCCTTTACCCTCAAAATGCCCGCTCTGCTAGGGATCCTCGCCACTCACTCATTAGATAAACCCGTTCCGGGTCTGAAGAATTTGATGGCTGAAAc < 1:286652/251‑1 (MQ=255) tCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTg < 1:12684/127‑1 (MQ=255) cGGAGACAGTTCTGCGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGATCAAGAGCGTAACGCCTTTGCCCTCAAAATTCCCGCGCTGCTAGGGATCCGCGCCACTCACGCATTAGATAAACCCGTGCCGGGTCTGAAGAATTTGATGGCTGAAACCTACCCACGCTTGCAAcgcg < 1:328432/251‑1 (MQ=255) cGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACg > 1:5626/1‑62 (MQ=255) cGTATGAAGTCGCAAAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACg < 2:5626/62‑1 (MQ=255) || GCCAGGTGAAATTTGTGCACACCGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACGCTCGTTTGCCATCGGTTCCGTCTTCGGTACTCTGGCGATTATCGGTACCCTGCAACTCGGAGACAGTTCTGCGTATGAAGTCGCGCAAGTACAACCGGTAAAACTGGCGGCGATGGAAGGGGAGTGGCAAACGGAACCTGCACCTGCACCGTTCCATGTGGTTGCCTGGCCGGAACAGGATCAAGAGCGTAACGCCTTTGCCCTCAAAATTCCCGCGCTGCTAGGGATCCTCGCCACTCACTCATTAGATAAACCCGTGCCGGGTCTGAAGAATTTGATGGCTGAAACCTACCCACGCTTGCAACGCG > NC_000913/1038278‑1038700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |