New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	19796 =	NA (NA)	22 (1.420)	17/306	0.0	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 361656	0 (0.000)					coding (205/612 nt)	lacA	galactoside O‑acetyltransferase

ATACGGATTATTCTGCGCTTTTTAGTCCAGCGGTGCGTTAATCGGCAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCC  >  NC_000913/19580‑20011                                                                                                                                                                                                                         |                                                                                                                                                                                                                        aTACGGATTATTCTGCGCTTTTTAGTCCAGCGGTGCGTTAATCGGCAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGTATGCTGAAAAGAGTAGTAATTGCTTGTAATGACTCCAACTTATGGATAGTGTTTTATNt                                                                                                                                                                                       <  1:275659/251‑1 (MQ=255)                 gcTTTTTAGTCCAGCGGTGCGTTAATCGGCAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACCTTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGa                                                                                                                                                                                                    >  1:332261/1‑222 (MQ=255)                                   ncGTTAATCGGCAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGTATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTc                                                                                                                                                     >  1:215898/2‑251 (MQ=255)                                              cAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCTATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACtttn                                                                                                                                                                <  1:102973/229‑2 (MQ=255)                                                                   gggggAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTc                                                                                                                     >  1:98242/1‑251 (MQ=255)                                                                                        cATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAATTAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTGATGACTCCAACTTATTGATAGAGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATTCAGCTCCACCGATTTTGAGAACGACAGCGACTTc                                                                                                                         >  1:290182/1‑226 (MQ=255)                                                                                                ctaTTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACTCGGTCGAATAAATAGAGTAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGATTAGTAATTGCTGGTAATGACTCCAACTTATTGATATTGTATTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGCCAGCGACTTCCGt                                                                                                                      <  1:255718/219‑1 (MQ=37)                                                                                                             gCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCt                                                                           <  1:136950/251‑1 (MQ=255)                                                                                                              cTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTGCGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAAGTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTAGGTTCAGATAATGCCCGATTTCTGTGGCATGCAGCTCCTCCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCa                                                                                             <  1:164071/232‑1 (MQ=25)                                                                                                              cTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGACTAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGCAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAcc                                                                                                                                                 >  1:246125/1‑180 (MQ=255)                                                                                                              cTCATAATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAANAGANTAGTNATNGCTGGTAATGACTCCNACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTNNCNNNCNGCTcctcc                                                                                                                                                 <  2:246125/180‑4 (MQ=38)                                                                                                                    attTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCATGTGCTGCCTCAGATTCAGGt                                                                                    <  1:272524/235‑1 (MQ=255)                                                                                                                         cccGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGcn                                                               <  1:284741/251‑2 (MQ=255)                                                                                                                                   aCATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATGGCTGGTAATGACTCCAACGTATTGATAGTGTTGTAGGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATGTTGAGAACGACAGCGACTTCCGGCTCAGCCGGGCCAGGGGCTGCCTCAGAGTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCtt                                                     <  1:193839/251‑1 (MQ=21)                                                                                                                                                       cgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGTTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTc                                 <  1:255330/251‑1 (MQ=255)                                                                                                                                                       cgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATTCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTc                                 <  1:255321/251‑1 (MQ=255)                                                                                                                                                            gAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTACTGACTCCAAATTATTGATAGTGTTTTATGTTCAGAt                                                                                                                                                                                 >  1:355794/1‑102 (MQ=255)                                                                                                                                                                     gagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCATCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGc                                                                   <  1:316612/203‑1 (MQ=255)                                                                                                                                                                      agGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGAtt                  <  1:193355/251‑1 (MQ=255)                                                                                                                                                                            cTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAGTGATAGTGTTTTATGTTCAGATAATGCCCGATGACGTTGTCATGTAGCTCCACCGATTTTGATAACTACAGCTACTTCCGTCCCAGCCGTTCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTc                                                                     <  1:263957/194‑1 (MQ=17)                                                                                                                                                                              gATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAgn          <  1:89064/251‑2 (MQ=255)                                                                                                                                                                              gATTACTTCCGTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATAACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCTCCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCtn                                   <  1:92002/226‑2 (MQ=255)                                                                                                                                                                                 tACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATGGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGGTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCgg        <  1:230710/250‑1 (MQ=255)                                                                                                                                                                                  aCTTCCTTCATGGGGATGCGGAAAAGAGTAGTAATGGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTACGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTTAAGTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCGTCAGGCGGGATTCATACAGCGgc       <  1:269246/250‑1 (MQ=255)                                                                                                                                                                                   cttccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCATATAATGCCCGATGTCTTTGTCATTCAGCTCCACCGATTTTGAAAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGcc                                                                                                <  1:239220/160‑1 (MQ=18)                                                                                                                                                                                      ccttcATGGGGATGCTGCAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGgccagcc  >  1:259400/1‑251 (MQ=255)                                                                                                                                                                                              nggATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTc                                 >  1:214135/2‑212 (MQ=255)                                                                                                                                                                                                      gAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg                                                                                                                                          >  1:141407/1‑99 (MQ=255)                                                                                                                                                                                                                gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg                                                                                                                                                           <  1:106129/72‑1 (MQ=255)                                                                                                                                                                                                                      gCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAt                                                                                                                                              <  1:158578/79‑1 (MQ=34)                                                                                                                                                                                                                         |                                                                                                                                                                                                                        ATACGGATTATTCTGCGCTTTTTAGTCCAGCGGTGCGTTAATCGGCAGCTCCCCCAAAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCC  >  NC_000913/19580‑20011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.