New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3584195	NA (NA)	18 (1.160)	11/308	0.2	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4544735 =	0 (0.000)					coding (432/726 nt)	fimC	type 1 fimbriae periplasmic chaperone

CTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTAC  >  NC_000913/3583952‑3584417                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                               ntttGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCAGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGACAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAtt                                                                                                                                                                                                                          >  1:208495/2‑250 (MQ=17)                   gATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGaa                                                                                                                                                                                                        >  1:94628/1‑250 (MQ=40)                                               tCCCGTCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTAAAAATCGGTGGAGCTGCATGACAAAGTAATCGGGCATTATCTGAACATAAAAAACTCTAAAAAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata                                                                                                                                                                            >  1:264100/1‑250 (MQ=17)                                                 ccGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAatatat                                                                                                                                                                         >  1:122899/1‑251 (MQ=255)                                                                              gCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTc                                                                                                                                            >  1:12896/1‑251 (MQ=255)                                                                                           gCAGCGAATTGAGCGGCATAACCTGCATCGGAGGCAGCACCTGGCACGGCTGGGACGGACGTCGCTGTCGTTCTCAACATCGGTGGAGCTGCATGACAAAGACATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACtttgtt                                                                                                                                                                                                           >  1:117253/1‑172 (MQ=14)                                                                                                       gCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTCCAGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTATTCATTCTTAAACGAAATCATGGACAgttgtt                                                                                                                   >  1:257007/1‑251 (MQ=255)                                                                                                                ncTGAATCTGCGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATaataat                                                                                                          >  1:102656/2‑251 (MQ=255)                                                                                                                               ncaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACaaa                                                                                            >  1:34948/2‑250 (MQ=255)                                                                                                                                       cACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGAGGAGCTGCATGACATAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTATGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGt                                                                                   >  1:258497/1‑251 (MQ=255)                                                                                                                                          ggCTGGGACGGAAGTCGCTGTCGTTCTCAAAAGCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTGTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAg                                                                                                                                                            <  1:341610/175‑1 (MQ=255)                                                                                                                                                           nnnnnnttNNNNNAATNGGTGGATCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGt                                                                                                                                                                    <  2:208495/144‑1 (MQ=21)                                                                                                                                                                     cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTAc                                                        <  1:112747/248‑1 (MQ=255)                                                                                                                                                                       aaaTCGGTGGAGCTGCATGACAATGTCATCGGGCATTATCTGAACATAAAACACTATCAATAATTTGGAGTGATTCCCGACATTAAAAGTAGCTTTTTTGAAAGTAAAGATAATAGTAGCACACAAAATAGATTCAGTTCGTGTAGTTATTTCTCTTTATTCTTAAACGAAATCATGCGCAGTTGGGTATAATAATCAAAAGGAAACAAAAATCATTGTAACCCATGCCATCTTTTTAGAGATTACcagca                                                   <  1:351468/251‑1 (MQ=25)                                                                                                                                                                           cGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGCTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGaa                                                >  1:264510/1‑250 (MQ=255)                                                                                                                                                                            ggTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCCATAAGTTGGAGTCATTACCGCCATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCAtaataa                                                                                                           >  1:172406/1‑190 (MQ=255)                                                                                                                                                                                     gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGGTAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCAGTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTg                                       <  1:113484/249‑1 (MQ=255)                                                                                                                                                                                     ccATGACAAAGTCATCGGGCATTATCTGAACATAAAAAACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGAAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGtt                                     >  1:316716/2‑251 (MQ=255)                                                                                                                                                                                              aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTa                            <  1:171068/251‑1 (MQ=255)                                                                                                                                                                                                         aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTGTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCg                                   <  1:233299/233‑1 (MQ=255)                                                                                                                                                                                                                    nnnnnnnncnatnnagaanggggAGTCATTACCGACATTAAAANTAACTTTGTTGAAATTAGAGATAATATGGGCNCNGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAANTCATGGACAGNTGTNNATAANANTNAAAAGTAAACAAAAATCATTGGAATCCATNCCATCTTTTTAGAGATTACCAGCNNAANNNTCNNTGTTc                                    <  2:264510/200‑1 (MQ=255)                                                                                                                                                                                                                                 aaTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTc                                    >  1:23826/1‑208 (MQ=255)                                                                                                                                                                                                                                          gAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCCCAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCCTACTAATCAACAGGAAACAAAACTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTg                      >  1:199141/1‑213 (MQ=255)                                                                                                                                                                                                                                            gTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTAATTCTTAAACGGAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTAc  >  1:325557/1‑231 (MQ=255)                                                                                                                                                                                                                                              cATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGCAAATATATTAAGTTCGTTTAGTGATTTATCTTCATTc                                                                                                                                            >  1:204304/1‑91 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                               CTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTAC  >  NC_000913/3583952‑3584417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.