| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,801,997 | IS1 (–) +9 bp | [waaJ] | [waaJ] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 27 (1.750) | 20/306 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3801997 = | 0 (0.000) | coding (3/1017 nt) | waaJ | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 22 (1.410) | 21/308 | 0.0 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3802005 | 0 (0.000) | intergenic (‑6/+34) | waaJ/waaO | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase/UDP‑D‑glucose:(glucosyl)LPS alpha‑1,3‑glucosyltransferase | |||||
GGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3583620‑3583428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGG > NC_000913/3801997‑3802229 GGTGTAAGTGAACTGCAGTTGCCAGGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCCCCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATACAAACAGAAGCCACTGGATCACCTCAAAAACACCATCATACAGTAAATCGGTATTTTTGCAGCATGACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCC < 1:226009/230‑1 GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACGCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAAGGCTGTAGCTTTTCAATAAGATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATG < 1:142312/251‑1 CACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATCTCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTG > 1:59492/1‑250 CGTCAGTAGCTGAACAGGCGGGAAAGCTGCTAGACACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATA > 1:94785/1‑119 GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACTCTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTGCTTTATAGTTTCCCATTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGAGAGCTATGCTTTTTAAGCATATGTTTTGCGATATATCTTAATTGATTGCTATTGTTCGGTTTC < 1:61477/250‑1 GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTC > 1:82184/1‑250 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTTGCAGCATCACCCTCAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTAGCTAAATCCTTTTAGAGATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAG < 1:168346/251‑1 nGAGGGACAGCTGCTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAAC > 1:284808/2‑251 GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACGTCAAAAACACTATCATACACTAAATCAGTAAATTCGCAGCATCCCCCACAATGCTACCTTTATATCATTACTTTATAGATTCACAGCTTTAATGCTTTATATTTTC > 1:268253/1‑145 GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTAC > 1:185937/1‑96 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATC < 1:300448/215‑1 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATC < 1:300457/215‑1 nCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAACACCACCATCATCAACTAAATCCGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGT > 1:67210/2‑250 AACAGAAGCCACTGGAGCACCTCAAAAACGCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCGTTTCAAGAAAAGAAAAAAGATAGTTGCTAAATCCTTTTAGATAGCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGAGTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGC < 1:172551/251‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATC > 1:16654/1‑156 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGGTGCTAAATCCTTTTAGATATCTATGCTTTGTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGC < 1:315550/251‑1 cacaGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTAT < 1:18546/227‑1 CNCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTT > 1:278371/1‑251 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCNG < 1:276019/194‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACCATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTG > 1:244209/1‑234 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTG > 1:151807/1‑188 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAAATGCTACAATTATATCATTACTTTATAGTTTCCCAGATTTAATGCTTTATCTTTTCAATCAAATAAACAAGATAGTTGCTCAATCCTTTTAGATATCTATGCTTTTTTAGCATATGTTTTGCGCTATATCTTAATTGACTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAG > 1:360050/1‑245 AGTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCACAGTTTTAATGCTTTATCTTTTCAATAAACTAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCC > 1:180839/1‑250 nTAAGTTGGCAGCATCACCCACAATGCTACCCTTATATCCTTACTTTATCGTTTCCCAGTTTTACTGCTTTATCTTTTCAATAACATAAAACAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGA > 1:38470/2‑161 GTAAGATGGCAGCATCACCCACAATGCTACACTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATCAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCC > 1:84257/1‑249 GCATCACCCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGC < 1:359504/114‑1 ATCACCCCCAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTCTTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGCTAATCCCAGG > 1:185194/1‑239 GGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3583620‑3583428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCACAATGCTACCCTTATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGG > NC_000913/3801997‑3802229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |