| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,679,581 | G→A | G55R (GGA→AGA) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,679,581 | 0 | G | A | 90.9% | 48.6 / NA | 24 | G55R (GGA→AGA) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| Reads supporting (aligned to +/- strand): ref base G (1/1); major base A (12/8); minor base C (2/0); total (15/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
AAACCACCACAGCGCAAACTAACGCTAATTTTTTACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGG > NC_000913/3679366‑3679823 | aaaCCACCACAGCGCAAACTAACGCTAATTTTTTACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGGGAAAGGCGCGGACGTTAAGCGCGTTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTATCCGGTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGcc < 1:351773/251‑1 (MQ=255)aaaCCACCACAGCGCAAACTAACGCTAATTTTTTACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGGGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGcc < 1:351761/251‑1 (MQ=255) acaGCGCAAACTAACGCTAATTTTTTACAGATCAGGTTCACGACTATGTCCACAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATATCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGc > 1:162131/1‑247 (MQ=255) cACGACTATGTCCAAAAAGATTGCAGTGATTGGCGAATGCATGATTTAGATTTCCGAGCCAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGCTACCCTGAACACTTCCGTCTATCTCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGCGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATg > 1:319827/1‑247 (MQ=255) ttGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGCGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGaaa > 1:4111/1‑222 (MQ=255) ccGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACg > 1:3830/1‑251 (MQ=255) ggACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAg > 1:190015/1‑222 (MQ=255) naCGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGTTCCTGCGGCATTACACGTTCATTACGCAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGCTGCTGGACGCCTGGCACGGCGAGCACGTTGATACTTCCCTGa > 1:64875/2‑169 (MQ=255) gACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCGGTCTATATCGCAGGTCAGGTCGATCCTGCGGCATTAAGAGTTCATTACGTACCGGCGCTGAGAACGGACAGTTTTAGCCAGAAGATGCTGGACGCCTGGCACGGAGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACTGCCAGCACCGGCGAGCGTACGTTc > 1:255588/1‑240 (MQ=255) gcgcGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTACCGGCGCTGAGAACGGACAGTTTTCGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGCACGa > 1:349848/1‑249 (MQ=255) cgcgGTTTCGGCGGCGATACCCTGAACGCTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAg < 1:5944/250‑1 (MQ=255) cgATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTGACCGTTCATTACGTAACGGCGCTGAGAACGGACNNTTTTAgnn > 2:19457/1‑96 (MQ=255) gATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGc > 1:7468/1‑123 (MQ=255) aTACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCGGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTctgg < 1:294417/251‑1 (MQ=255) anNGCCCGTNNGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGc < 2:7468/99‑1 (MQ=255) tCAGGGCGAGCCTGCGGCATTAACCGTTCAGTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATACTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGc < 1:271467/250‑1 (MQ=255) ngTCGATCCTGCGGCCTTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGa > 1:91000/2‑249 (MQ=255) ggTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAgccgccgc > 1:77211/1‑207 (MQ=255) gTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGCCGCCTGGCACGGCGNNAACGTTNNt > 2:11590/1‑99 (MQ=255) gTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTGTTAGCCAGCAGATGCTGGACGCCTGGCCCGGCGAGAACGTTGATACTTCCCTGAc < 1:11590/110‑1 (MQ=255) aanaacngnncnnaccNTAACGGCGCTGAGAACGGACANNTTTAGCCAGNAGAGGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGNTGGAAAACCNNCGNCCGGGNCNNNCNNNCANTGAAACCGACAGCACCGGCNAGNNTACGTTNTACTACTGGCGTATCGAAgccgccgc < 2:77211/177‑1 (MQ=255) tAACCGTTCATTACGTAACGGCGCTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGCAAACCGTCTGCCGGGCCTTTACTACATNGCANNNNNCannnnnnnnnn > 2:223331/1‑144 (MQ=255) aNCNTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCNAGCTNANNCTNGNCGNCTGGc < 2:162131/64‑1 (MQ=255) ngcgcTGAGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGTGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCggg > 1:86301/2‑250 (MQ=255) | AAACCACCACAGCGCAAACTAACGCTAATTTTTTACAGATCAGGTTCACGACTATGTCCAAAAAGATTGCCGTGATTGGCGAATGCATGATTGAGCTTTCCGAGAAAGGCGCGGACGTTAAGCGCGGTTTCGGCGGCGATACCCTGAACACTTCCGTCTATATCGCCCGTCAGGTCGATCCTGCGGCATTAACCGTTCATTACGTAACGGCGCTGGGAACGGACAGTTTTAGCCAGCAGATGCTGGACGCCTGGCACGGCGAGAACGTTGATACTTCCCTGACCCAACGGATGGAAAACCGTCTGCCGGGCCTTTACTACATTGAAACCGACAGCACCGGCGAGCGTACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGG > NC_000913/3679366‑3679823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |