| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,520,199 | A→G | G158G (GGT→GGC) | gltX ← | glutamate‑‑tRNA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,520,199 | 0 | A | G | 93.3% | 31.5 / NA | 16 | G158G (GGT→GGC) | gltX | glutamate‑‑tRNA ligase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); major base G (8/6); minor base T (0/1); total (8/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
AAACGTGCGCGTAAACCGGCACCGGCGCTTTCAGGGCCTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGACCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGT > NC_000913/2519991‑2520442 | aaaCGTGCGCGTAAACCGGCGCCGGCGCTTTCAGGGTCTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCAACGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGAGCGTCCAGTGCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCggg < 1:174926/251‑1 (MQ=255) aaCGTGCGCGTAAACCGGCACCGGCGCTTTCAGGGCCTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGCTATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAAACACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAACCAAAAGAACCTTCCTGCGGGt > 1:313067/1‑251 (MQ=255) aCGTGCGCGTAAACCGGCACCGGCGCTTTCAGGGCCTTAAGAATGTGGATCTGGCGGGGCGTGTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACGCGATTGGGCCACGGATCTGATCGTCAAAAACAACAGATCCTGCCGGCGGGtt < 1:299124/251‑1 (MQ=255) accggcaccggcGCTTTCAGGGCCTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAACCACACAGAATTTATAGTTGGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTTGTTGCTGAACTCGATCGGTCCACGGATCTGATCTTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTac < 1:226859/251‑1 (MQ=255) cTTTCAGGGCCTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGATATGGTCGTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAACCACACAGAAGTGATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCg < 1:21488/197‑1 (MQ=255) ncTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAACCACACAGAAGTTATAGGATGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTTCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGc > 1:43876/2‑250 (MQ=255) ggcgtgTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGGCATCGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCAGGGCTGTggcggc < 1:117739/250‑1 (MQ=255) nttgATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGCCATCGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGt > 1:40571/2‑251 (MQ=255) cGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTAAGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGt > 1:187330/1‑132 (MQ=255) ggTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTGCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCatgatg < 1:339358/150‑1 (MQ=255) naaCCATCGGTACGGCGGATAATAAGATCGTCCAGTTACTGGTTGCTGAACTCGATCGGGCCACGGCTCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTCGCGCAgc > 1:71524/2‑213 (MQ=255) ncATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCACTTTAGAGCAATAGCATTTATAAGCAGt > 1:214003/2‑251 (MQ=255) gTCCAGTTCCTGGTTGCTTAACTCGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCTGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTcg < 1:226686/178‑1 (MQ=255) naaCTCGATCGGGCCACGGATCTGATCGTCAAAAACACCAGAACCTTCCTGCGGGTTAGCAAACCGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCt > 1:43567/2‑224 (MQ=255) cGATCGGGCCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGt > 1:153272/1‑251 (MQ=255) tCGGACCACGGATCTGATCGGCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGTTTCATCAACAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCAc < 1:59511/132‑1 (MQ=255) | AAACGTGCGCGTAAACCGGCACCGGCGCTTTCAGGGCCTTAAGAATGTTGATCTGGCGTGGCGTGTTGTTGATATGGTCTTCGCCACGGATAACGTGGGTGATTTCCATATCCCAGTCATCGACAACCACACAGAAGTTATAGGTTGGGGAACCATCGGTACGGCGGATAATAAGATCGTCCAGTTCCTGGTTGCTGAACTCGATCGGACCACGGATCTGATCGTCAAAAACAACAGAACCTTCCTGCGGGTTAGCAAAACGTACAACACACGGTTCATCATCAGCATGATGCTCATGGCTGTGGCGGCAGCGACCGTCATAACGCGGCTTCTCACCTTTCGCCATTTGCTCTTCGCGCAGCGCTTCCAGGCGCTCTTTAGAGCAATAGCATTTATAAGCAGTGCCCTCTTCCAGCATCTGATCGATCACCGCGTTGTAGCGATCAAAACGT > NC_000913/2519991‑2520442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |