| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,699 | IS1 (+) +9 bp | coding (286‑294/312 nt) | ymdA → | uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 18 (1.160) | 14/308 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1105699 = | 0 (0.000) | coding (286/312 nt) | ymdA | uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 12 (0.770) | 8/308 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1105707 | 0 (0.000) | coding (294/312 nt) | ymdA | uncharacterized protein YmdA | |||||
GGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291187‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGACATTGCCGCTCATTAACGCTTTGCTGGAGTAGGTTTTGCCCGGAATAGAACCATTCTGTGGGCAGTTCATTTCTACGGG < NC_000913/1105707‑1105561 GGTGCGTACCGGGTTGATAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTGTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGATACTG < 1:272828/251‑1 nCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAACCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCACGATACTGCA > 1:211357/2‑250 nAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACCGGAGGGACAGCTGATAGCACCAGAACCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGACATTGCCGCTCATTAACGCTTTGCTGGAGT > 1:70007/2‑251 CGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGCACTTTTACTGAn < 1:212213/180‑2 CAGTGCGTTTGCCGGTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCAGACACTAAATCAGGAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGC < 1:263279/165‑1 nCACCCCGTCAGTAGCTGGACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATAATACACTAACTCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCCAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGCCATTGCCGCTCATTAACGCTTTGCTGGAGTAGGTTTTGCCCGGAATAGAACCATTCTGTGGGCAGTTCATTTCTAC > 1:104086/2‑251 CCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCGCCCATTACAGCCAGCTTGTTCTGTTTATCAAGATACTGCACTTATACTGAGGCTATTTGCGCGGTTTTGACATTTTCGCTCATTAACGCTTTGCTGGAGGAGGTTTTACCCGGAATAGAACCATTCTGTGGGCAGTTCATTTCTACGGG < 1:267875/251‑1 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCGGTTTATCAAGATACTGCAC < 1:105505/127‑1 GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACATAAAAAACACCATAATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCCGCTTTTTCTGTTTCTCAAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGACATTGCCGCTCATTAACGCTTTGCTGGAGT > 1:329970/1‑180 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGACATTGCCGCTCATTAACGCTTTGCTGGA > 1:186095/1‑145 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGAT < 1:149637/69‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGACATTGCCGCTCATTA > 1:26786/1‑118 GGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291187‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTACAGCCAGCTTTTTCTGTTTATCAAGATACTGCACTTTTACTGAGGCTATTTGCGCGTTTTTGACATTGCCGCTCATTAACGCTTTGCTGGAGTAGGTTTTGCCCGGAATAGAACCATTCTGTGGGCAGTTCATTTCTACGGG < NC_000913/1105707‑1105561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |