| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 472,849 | A→G | G84G (GGA→GGG) | glnK → | nitrogen regulatory protein PII‑2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 472,849 | 0 | A | G | 88.9% | 17.3 / ‑5.3 | 9 | G84G (GGA→GGG) | glnK | nitrogen regulatory protein PII‑2 |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (5/3); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACTGGTAATGGCTGCACCTGCG > NC_000913/472608‑473040 | tGACCGTGATAATCAAACCATGCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGACAGAAAGGGCATGCCGAGCGGTACCGGGGGTCGGAATACAGCGTCAATTGCCTGCCAAAAGTAAAAATTGATGTGGCTATTTCTGATTACCAACGCGATGAAGTGATGGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTgg < 1:243642/250‑1 (MQ=255) tGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGTAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACCCCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGACTTGCAACGCGTCATTCGTATTCGTACCGGCGa > 1:176586/1‑249 (MQ=255) tcatggCCTGACGGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGAGGTGGCGATTGCTGATGCCCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACCCCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCTTCTTTCGTATTCGTACCGGCGAAGCcgac < 1:22439/246‑1 (MQ=255) gTTTCGGGCTTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCTATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGACAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCGTCGTCGCTGAATTGCAACGCGTCATTCGTAGTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGc < 1:168156/251‑1 (MQ=255) gCCAAAAGTAACAATTGATGTGGCGATTGCTGATGACCACCTCGATGACGTGATCGATATCGTCCGTCAGGCGGCTTCCACCGGGGATATTGGCGACGGCAAAGTCtt > 1:195388/1‑108 (MQ=255) aTTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACGGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGCATTGCAACGCGTCCTTCGTATTCGTACCGGCGACGCCGACGAAGCGGCGCTGTAATTTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACTGGTAATGGCTGCACCTGCg > 1:344473/1‑251 (MQ=255) gCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGNGGCNNNNNa > 2:209988/1‑143 (MQ=255) gCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCan < 1:209988/210‑2 (MQ=255) ccAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGGAACATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGCAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACTGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCAc > 1:346702/1‑202 (MQ=255) | TGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCAGTAAGGCGGCTTACACCGGAAAAATTGGCGACGGCAAAATCTTCGTCGCTGAATTGCAACGCGTCATTCGTATTCGTACCGGCGAAGCCGACGAAGCGGCGCTGTAATCTCTGGCACACAGCAACAGGAACGAAAAATGAAGATAGCGACGATAAAAACTGGGCTTGCTTCACTGGCGATGCTTCCGGGACTGGTAATGGCTGCACCTGCG > NC_000913/472608‑473040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |