| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 416,276 | G→A | A226V (GCA→GTA) | sbcD ← | ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 416,276 | 0 | G | A | 95.2% | 55.9 / NA | 22 | A226V (GCA→GTA) | sbcD | ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (11/9); minor base C (0/1); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTCCTGCGATACATCGCGCCACTGTTCCAGCTGTGCGGTAATCGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTGCGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAATAATCGGTAATCGCTGCCAGTAAATGCTGCTGTTTTTC > NC_000913/416046‑416511 | gCTCCTGCGATACATCGCGCCACTGTTCCAGCTGTGCGGTAATCGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGAGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAgc > 1:10879/1‑251 (MQ=255) cACTGTTCCAGCTGTGCGGTAATCGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTTAATATGCCCGAGCGCTATGTAGTCGGCtggtgg < 1:279831/251‑1 (MQ=255) cGGTAATCGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGcccn < 1:85519/212‑2 (MQ=255) gTAATCGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGACTGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGttt > 1:190584/1‑240 (MQ=255) aaTCGACGCCAGATCTCCTTTCAGCACGGCCATGGGTTGCGTTACCGGTACGTGCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTGCGCTTTCCGCATTCAGCAAAACTCAGTGGAATGGGTGATCCGCAATAGCTAACATGTTCCATTCCGCCAATAATCTGTTTGCGTTTAATATGCCCGATCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAAc < 1:57268/250‑1 (MQ=255) cGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTGACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTGCCATGCCGCCAATAATCTGGACGCGGTGAATATGCCCGAGCGCGATGTAATCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGt < 1:199630/251‑1 (MQ=255) naCGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCtggt > 1:89214/2‑225 (MQ=255) ccTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTATAATTTGCAGTTTGAAAATGTCACAAGACGGACATATTTACTCTTACCGCATTCATCAAAACTCCGTGGAATGGGGGCGCCGCAATAGCGAATATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAat > 1:344164/1‑251 (MQ=255) gTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCTAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGTAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACgg < 1:160783/251‑1 (MQ=255) ctAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACGCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCCAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATAGGCCCTAGCTCGATGTAGTCGGCTTGTGGAAAGTTGTGTTCCGTTAACGCGTCCATCGTTCCAAGATAATTGTCACTCACGGCGTCACTTTTACTGGCCCCCTCGGTCGTTAAATGTc < 1:334775/249‑1 (MQ=255) aaTTTGCCGTTTGAAAATGTCACCAGTTGGACGTATTTACTCTTGCCGCATTCATCAAAACTCAGTGGAATTGGGGAGCGTCAATAGCTAGCATGTTCCATGCGGCCAATAATCTGTCCTCGTTAAATATGCCCGAGCTTTATGTAGTCGGGGGGTCGAATGTTTTGTGCCTGAATTGCTACCTTCGTGCCAATATAAAGGTCACGCACGGTGTCACTTTTACTGGCCCCCACGGTCTTTAAATGTccc < 1:173818/249‑1 (MQ=255) cGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCCATAATCTGTACGCGGTGAATATGCCCGAGCGCNTTGNNNNNggnnnnnnnnnn > 2:223763/1‑144 (MQ=255) cGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCgn < 1:223763/181‑2 (MQ=255) gTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGCGGAATGGGGGAGACGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCTCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGATAAATGTCCCGTGGCgatg > 1:337714/1‑250 (MQ=255) gAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATAGAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGatgatgn < 1:68431/250‑2 (MQ=255) tACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAAGAATCTGTACGCGGTGAATATGCCCGAGCGCGAAGTAGTCGGCTGGTGGAAAGGTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGGCACGCACGGCGTCTCTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAg < 1:348878/248‑1 (MQ=255) ntCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGaa > 1:88730/2‑100 (MQ=255) gggggAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGGAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAATAATCgg < 1:359734/251‑1 (MQ=255) nccGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCCTCGGCATAGTGTTGTTGGTAATAATCGGTAATCg > 1:87211/2‑251 (MQ=255) cAATAGCGAACATGTTCCATGCCGCCAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAATAATCGGTAATCGCTGc > 1:184810/1‑251 (MQ=255) gccgccAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGACACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAATAATCGGTAATCGCTGCCAGTAAATGCTGCTGttttt > 1:356077/1‑251 (MQ=255) ccgccAATAATCTGTACGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAATAATCGGTAATCGCTGCCAGTAAATGCTGCTGTTTTTc > 1:152684/1‑251 (MQ=255) | GCTCCTGCGATACATCGCGCCACTGTTCCAGCTGTGCGGTAATCGACGCCAGATCGCCTTTCAGCACTGCCATGGGTTGCGTTACCGGTACGTTCAGGTTTTCCACGCTCTCTAATTTGCCGTTTGAAAATGTCACCAGATGGACATATTTACTCTTACCGCATTCATCAAAACTCAGTGGAATGGGGGAGCCGCAATAGCGAACATGTTCCATGCCGCCAATAATCTGTGCGCGGTGAATATGCCCGAGCGCGATGTAGTCGGCTGGTGGAAAGTTTTGTGCCGGAAACGCGTCCAGCGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAATAATCGGTAATCGCTGCCAGTAAATGCTGCTGTTTTTC > NC_000913/416046‑416511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |