| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 495,622 | C→T | T168I (ACC→ATC) | htpG → | chaperone protein HtpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 495,622 | 0 | C | T | 95.0% | 52.8 / NA | 20 | T168I (ACC→ATC) | htpG | chaperone protein HtpG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/9); minor base G (0/1); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
CCGCGACGAAGTGATTGACCATCTGGGGACTATCGCTAAATCCGGTACCAAATCATTCCTCGAATCCCTGGGTTCTGACCAGGCGAAAGACAGCCAGCTGATCGGTCAGTTTGGTGTTGGTTTCTACTCTGCGTTTATCGTGGCCGACAAAGTGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCACCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTCCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTGGGAGAAAATCAACAAAGCGCAGGCGCTGTGGACTCGTAACAAGTCGGAAATCACCGATGAAGAGTACAAAG > NC_000913/495377‑495861 | ccGCGACGAAGTGATTGACCATCTGGGGACTATCGCTAAATCCGGTACCAAATCATTCCTCGAATCCCTGGGTTCTGACCAGGCGAAAGACAGCCAGCTGATCGGTCAGTTTGGTGTTGGTTTCTACTCTGCGTTTAGCGGGGCCGACAAAGTGACCGTGCTTACTCGCGCGGCAGGCGAAAAACCAGAAAATTGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAaag < 1:149544/251‑1 (MQ=255) naTTCCTCGAATCCCTGGGTTCTGACCAGGCGAAAGAGACCCAGCTGATAGGTCAGTTTGGTGTTGGTTTCTACTCTGAGTTTATCGTGGCCGACAAAGTGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCAGAACATGGCGTCTTCTGGGAATCAGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAaagaag > 1:63550/2‑201 (MQ=255) ccTCGAATCCCTGGGTTCTGACCAGGCGAAAGACAGCCAGCTGATCGGTCAGTTTGGTGTTGGTTTCTACTCTGCGTTTATCGTGGCCGACAAAGTGACCGTGCGTGCTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATTCACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTtctc < 1:142069/250‑1 (MQ=255) gAAAGACAGCCAGCTGATCGGTCATGTTGGTGTTGGTTTCTACTCTGCGTTTATCGTGGCCGACAAAGTGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCATAAAAGGGCGTCTGCTGGGAATCGGCTGTCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCAGCTGCATGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCAtcatca < 1:318493/251‑1 (MQ=255) gtTGGTTTCTACTCTGCGGTTATCGTGTCCGACAAAGTGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACAGCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGGTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGt < 1:305296/251‑1 (MQ=255) gTTTCTACTCTGCGTTTATCGTGGCCGACAAAGGGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATAAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGACGGCGCAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTag > 1:168107/1‑249 (MQ=255) ctctGCGTTTATCGTGGCCGACAAAGTGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGaa > 1:291005/1‑250 (MQ=255) gCGTACTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTAtct > 1:94711/1‑251 (MQ=255) cTCGCGCGGCAGGCGAAAAACCAGAAACTGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCATTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTgg > 1:291814/1‑251 (MQ=255) cgcgcgGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTgg < 1:301004/249‑1 (MQ=255) cgcgGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGACTCGGCTGGCGCGGGTGAATACATCGTTGACGCCATCATCAAAGAAGCTCGTGCTACTGAAATCACCCTGCCTCTGCGTGACGGCGACGACCTGTTTCTCGTTGACTGGCGCGTGCGTTCCATCATCAGCAACTACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAACCGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTggg > 1:247889/1‑248 (MQ=255) gCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTGGGAGAAAAt > 1:4320/1‑251 (MQ=255) gCAGGCGAAAAACCAGAAAATGGCGTCTTCAGGGAATCGGCTGTCGAAGTTGATTACTCCGGGGCCGACATCAGCAAAGAAGATCGTGGTAGTGTAATCTCCGTGCATCTGCGTAAAGGCTATGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCa < 1:346295/179‑1 (MQ=255) cAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCAGGCGAAGATGAATACACCGTAGCAGACATATTCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGGTCGAAAAACGCGACGAGAAAGACGGCGAAACCGTTATCTCCTGGGCGAAAATc > 1:238947/1‑251 (MQ=255) aaaCCAGAAAATGGCGTCTGCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGGGCGTTCCATCATCAGCAAAAACTCCGACCATATCGCGCTGCCGGTAGATATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTGGGAGAAAATCAACAAAgc < 1:48365/251‑1 (MQ=255) ggAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTGGGAGAAAATCAACAAAGCGCAGGCGCTGTGGACTCGTAAc > 1:113879/1‑250 (MQ=255) ggCTGGCGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACATAAATCTCCCTGCATCTGCGGGAAGGCTAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATGCTCCGGCCAGATCGCGCTTCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCt < 1:360110/203‑1 (MQ=255) cGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGgcgcn < 1:218796/104‑2 (MQ=255) cGAAGGTGAATACACCGTTGCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGcgcg > 2:218796/1‑104 (MQ=255) gCCGACATCATCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTGGGAGAAAAGCAACAAAGCGCAGGCGCTGTGGACTCGTAACAAGTCGGAAATCACCGATGAAGAGTACAAag < 1:152127/250‑1 (MQ=255) atcatcAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTTCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATan < 1:63918/102‑2 (MQ=255) | CCGCGACGAAGTGATTGACCATCTGGGGACTATCGCTAAATCCGGTACCAAATCATTCCTCGAATCCCTGGGTTCTGACCAGGCGAAAGACAGCCAGCTGATCGGTCAGTTTGGTGTTGGTTTCTACTCTGCGTTTATCGTGGCCGACAAAGTGACCGTGCGTACTCGCGCGGCAGGCGAAAAACCAGAAAATGGCGTCTTCTGGGAATCGGCTGGCGAAGGTGAATACACCGTTGCCGACATCACCAAAGAAGATCGTGGTACTGAAATCACCCTGCATCTGCGTGAAGGCGAAGACGAGTTCCTCGATGACTGGCGCGTGCGTTCCATCATCAGCAAATACTCCGACCATATCGCGCTGCCGGTAGAGATCGAAAAACGCGAAGAGAAAGACGGCGAAACCGTTATCTCCTGGGAGAAAATCAACAAAGCGCAGGCGCTGTGGACTCGTAACAAGTCGGAAATCACCGATGAAGAGTACAAAG > NC_000913/495377‑495861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |