New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	19796 =	NA (NA)	22 (1.420)	17/306	0.0	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 361656	0 (0.000)					coding (205/612 nt)	lacA	galactoside O‑acetyltransferase

GGTGACGCCTGGATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCGTTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCC  >  NC_000913/361408‑361872                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                         ggTGACGCCTGGATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCACTTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAgg                                                                                                                                                                                                                        <  1:158784‑M2/251‑3 (MQ=255)                                   ntcCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgtt                                                                                                                                                                                      <  1:211639‑M2/250‑37 (MQ=255)                                       aGACGTTATTGCCAATCGTTATCGGCAAAGAGCACATCTCGACGTTTTTTCTCCATTCATGGTGTAAAGGGTGTACCGTAACGGGAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGCAATAggtaatgactccaacttattgatagtgttttatgttc                                                                                                                                                                                     <  1:163868‑M2/248‑38 (MQ=255)                                       aGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACTTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTGAAATTGAAATTTGCATAAAAATTGCGGCCTATATTGATGTTGGACCCGTAAGAGAAATAggtaatgactccaan                                                                                                                                                                                                           >  1:72700‑M2/1‑211 (MQ=255)                                                                               gCCGTTTTTTCTCAAGTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAgggaatgacnc                                                                                                                                                                                                               >  1:275817‑M2/1‑171 (MQ=255)                                                                                        tctcAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacctattttgagaacgac                                                                                                                                  >  1:260659‑M2/1‑162 (MQ=255)                                                                                         ctcAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCTCCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaact                                                                                                                                                                                                          >  1:158183‑M2/1‑161 (MQ=255)                                                                                                                       aCGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgtgttatgttcatataatgcccgatgactttgtcatgcagctcctccgattttgagaacgacagcgacttccgtcccagccgtg                                                                                                            >  1:305202‑M2/1‑131 (MQ=255)                                                                                                                        nggaACGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                                                                                           <  1:103866‑M2/192‑64 (MQ=255)                                                                                                                                gTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgtcaggtgctgcctcagatt                                                                                         <  1:165375‑M2/251‑130 (MQ=255)                                                                                                                                        gggTGCAATCAGTACGTTATCACCGAGTGTTACCGTGTAGTCAACGACAATGGTGAAATTTAAATTTGCATAAGAATTGCGGCCTATATGGATGTTGGAACCGTAATATAAATAggtaatgactccaacttattgatagttgtgtgtgttcatataatgcccgatgacgttgtcatgcagcgccacctattttgagatcgacagcgacttccttcccagccgtgccaggtgctgcctcagattcaggtta                                                                                  >  1:343605‑M2/1‑114 (MQ=255)                                                                                                                                         ggTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGAATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttctgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg                                                                                <  1:202765‑M2/251‑139 (MQ=255)                                                                                                                                                                            gtAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgatt                                              >  1:351973‑M2/1‑78 (MQ=255)                                                                                                                                                                               gTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccc                                                                                                                   <  1:123997‑M2/178‑104 (MQ=255)                                                                                                                                                                                                 aTTGACATTTGCATAAAAATTGCGGCCTATATGGATGTTGAAACCGTACGAGCCATCggcaatgcctcaaacctaacgacagtgctttatgtacagataatgcccgatgactttgccatgccgctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttccattcaggc                        <  1:196997‑M2/251‑195 (MQ=255)                                                                                                                                                                                                             aTAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagcgccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagtttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcc                                >  1:342568‑M2/1‑45 (MQ=255)                                                                                                                                                                                                                       nggcCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagcc  <  1:218330‑M2/250‑217 (MQ=255)                                                                                                                                                                                                                       aggcCTATATGGATGTTGGAACCGTAAGAGAAATAggaaatgactccaaattattgatagtgttttatgttcagatactgcccgatgactttgtcatgcagctcccccgattttgcgaa                                                                                                                                      <  1:226490‑M2/118‑85 (MQ=255)                                                                                                                                                                                                                                 ggATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgagagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                                                                                                        >  1:343743‑M2/1‑25 (MQ=255)                                                                                                                                                                                                                                     gTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatacccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcagg                         >  1:346143‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                         gAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccanngattttn                                                                                                                                          <  2:3781‑M2/97‑81 (MQ=255)                                                                                                                                                                                                                                                aaGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgaagactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                                                                                                      >  1:227996‑M2/1‑10 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                         GGTGACGCCTGGATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCGTTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCC  >  NC_000913/361408‑361872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.