breseq  version 0.39.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
JC JC 57,276 IS2 (+) +5 bp intergenic (‑167/‑84) lptD ← / → djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA
RA 71,134 G→A G250S (GGT→AGT)  araC → DNA‑binding transcriptional dual regulator AraC
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
RA 387,234 G→T M88I (ATG→ATT)  tauC → taurine ABC transporter membrane subunit
RA 422,420 C→T intergenic (+61/‑98) proY → / → malZ putative transporter ProY/maltodextrin glucosidase
RA 435,232 C→T Y32Y (TAC→TAT)  nusB → transcription antitermination protein NusB
RA 443,558 G→A G28G (GGC→GGT)  yajL ← protein/nucleic acid deglycase 3
RA 453,786 C→T D128N (GAT→AAT)  yajG ← putative lipoprotein YajG
RA 455,339 C→T D69D (GAC→GAT)  tig → trigger factor
RA 465,330 C→T S73N (AGC→AAC)  queC ← 7‑cyano‑7‑deazaguanine synthase
RA 479,071 C→T G61S (GGC→AGC)  ylaC ← putative inner membrane protein
RA 485,272 C→T Q116Q (CAG→CAA)  acrA ← multidrug efflux pump membrane fusion lipoprotein AcrA
RA 496,491 C→T L458L (CTG→TTG)  htpG → chaperone protein HtpG
RA 525,335 G→A S692N (AGT→AAT)  rhsD → protein RhsD
RA 557,635 A→T L36Q (CTG→CAG)  folD ← bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
JC JC 568,449 IS2 (–) +5 bp coding (135‑139/333 nt) emrE → multidrug/betaine/choline efflux transporter EmrE
RA 631,633 G→A W580* (TGG→TGA)  cstA → pyruvate transporter CstA
RA 664,586 C→T G202D (GGT→GAT)  rlpA ← rare lipoprotein RlpA
RA 667,705 C→T A171A (GCG→GCA)  mrdA ← peptidoglycan DD‑transpeptidase MrdA
RA 677,500 C→T S29F (TCC→TTC)  djlB → J domain‑containing protein DjlB
RA 681,686 C→T intergenic (+23/+37) djlC → / ← hscC co‑chaperone DjlC/chaperone protein HscC
RA 697,786 G→A T464T (ACC→ACT)  asnB ← asparagine synthetase B
RA 759,162 C→T L153F (CTC→TTC)  sucA → subunit of E1(0) component of 2‑oxoglutarate dehydrogenase
RA 766,350 C→T L123L (CTG→TTG)  mngA → 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II
RA 775,195 C→T L15F (CTT→TTT)  tolQ → Tol‑Pal system protein TolQ
RA 777,076 C→T A245A (GCC→GCT)  tolA → Tol‑Pal system protein TolA
RA 783,318 C→T G51G (GGC→GGT)  pnuC → nicotinamide riboside transporter
RA 785,710 C→T F26F (TTC→TTT)  aroG → 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive
RA 796,038 C→T P59P (CCC→CCT)  modB → molybdate ABC transporter membrane subunit
RA 801,024 C→T T89I (ACC→ATC)  ybhH → putative isomerase YbhH
RA 1,080,523 G→A G407S (GGC→AGC)  putP → proline:Na(+) symporter
JC JC 1,105,376 IS2 (–) +5 bp intergenic (+83/‑34) csgC → / → ymdA curlin chaperone/uncharacterized protein YmdA
RA 1,111,836 G→A S325N (AGC→AAC)  opgH → osmoregulated periplasmic glucans biosynthesis protein H
RA 1,119,030 G→A T6I (ACC→ATC)  yceJ ← putative cytochrome b561 YceJ
RA 1,131,197 C→T T60T (ACC→ACT)  flgB → flagellar basal‑body rod protein FlgB
RA 1,131,281 T→C R88R (CGT→CGC)  flgB → flagellar basal‑body rod protein FlgB
RA 1,132,514 A→G T221A (ACC→GCC)  flgD → flagellar biosynthesis, initiation of hook assembly
RA 1,196,220 C→T H366H (CAC→CAT)  icd → isocitrate dehydrogenase
RA 1,290,881 C→T L214F (CTT→TTT)  rssB → regulator of RpoS
MC JC 1,294,035 Δ141 bp [tdk] [tdk]
MC JC 1,299,499 Δ1,199 bp insH21 insH21
MC JC 1,303,073 Δ12 bp coding (175‑186/921 nt) oppB → murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA 1,337,394 A→G S522G (AGC→GGC)  acnA → aconitate hydratase 1
RA 1,353,758 T→A D254V (GAT→GTT)  sapC ← putrescine ABC exporter membrane protein SapC
RA 1,394,793 C→T P523S (CCT→TCT)  mppA → murein tripeptide ABC transporter periplasmic binding protein
RA 1,410,575 C→T I355I (ATC→ATT)  dbpA → ATP‑dependent RNA helicase DbpA
RA 1,412,787 C→T R150K (AGA→AAA)  intR ← putative integrase
RA 1,428,903 C→T pseudogene (108/189 nt) lomR → Rac prophage; protein LomR_1
RA 1,457,440 C→T C337C (TGC→TGT)  paaE → phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit
RA 1,494,388 Δ1 bp coding (684/924 nt) ydcI ← DNA‑binding transcriptional dual regulator YdcI
RA 1,648,423 G→A intergenic (+82/‑85) dicA → / → ydfA DNA‑binding transcriptional dual regulator DicA/DUF1391 domain‑containing protein YdfA
RA 1,652,331 T→C intergenic (+2346/+397) ydfD → / ← ynfP lysis protein/protein YnfP
RA 1,667,887 Δ1 bp coding (678/1221 nt) mlc ← DNA‑binding transcriptional repressor Mlc
RA 1,744,751 Δ1 bp coding (1295/1374 nt) mdtK → multidrug efflux pump MdtK
JC JC 1,792,772 IS2 (–) +5 bp intergenic (‑41/+33) nlpC ← / ← btuD NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit
RA 1,978,243 G→T intergenic (‑46/+275) flhD ← / ← insB5 DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB
RA 2,003,264 C→T E115K (GAA→AAA)  fliC ← flagellar filament structural protein
RA 2,032,423 G→A V219V (GTC→GTT)  yedJ ← putative HD superfamily phosphohydrolase YedJ
RA 2,106,005 G→A A18V (GCA→GTA)  wbbI ← beta‑1,6‑galactofuranosyltransferase WbbI
RA 2,120,462 G→A P365S (CCG→TCG)  wcaJ ← UDP‑glucose:undecaprenyl‑phosphate glucose‑1‑phosphate transferase
RA 2,123,372 G→A D383D (GAC→GAT)  cpsB ← mannose‑1‑phosphate guanylyltransferase
RA 2,126,648 G→A I181I (ATC→ATT)  fcl ← GDP‑L‑fucose synthase
RA 2,134,549 G→A T368T (ACC→ACT)  wzc ← protein‑tyrosine kinase Wzc
RA 2,143,831 G→A R189Q (CGG→CAG)  dgcE → putative diguanylate cyclase DgcE
RA 2,144,394 G→A E377K (GAA→AAA)  dgcE → putative diguanylate cyclase DgcE
RA 2,144,574 G→A A437T (GCG→ACG)  dgcE → putative diguanylate cyclase DgcE
RA 2,145,515 G→A M750I (ATG→ATA)  dgcE → putative diguanylate cyclase DgcE
RA 2,150,076 G→A Q304* (CAA→TAA)  yegI ← putative serine/threonine‑protein kinase YegI
RA 2,153,068 G→A P21S (CCC→TCC)  yegL ← IPR002035 domain‑containing protein YegL
RA 2,155,038 G→A L341L (CTG→CTA)  mdtA → multidrug efflux pump membrane fusion protein MdtA
RA 2,158,185 G→A A975T (GCT→ACT)  mdtB → multidrug efflux pump RND permease subunit MdtB
RA 2,163,815 G→A D314N (GAT→AAT)  baeS → sensor histidine kinase BaeS
RA 2,164,620 G→A R115R (CGG→CGA)  baeR → DNA‑binding transcriptional activator BaeR
RA 2,165,680 G→A E5K (GAA→AAA)  trhP → tRNA wobble base hydroxylation protein TrhP
RA 2,172,238 A→G S212S (AGT→AGC)  gatD ← galactitol‑1‑phosphate 5‑dehydrogenase
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 2,186,768 C→T intergenic (+27/‑192) rcnA → / → rcnB Ni(2(+))/Co(2(+)) exporter/periplasmic protein involved in nickel/cobalt export
RA 2,215,077 G→A S71N (AGT→AAT)  mlrA → DNA‑binding transcriptional activator MlrA
RA 2,215,977 G→A A167V (GCG→GTG)  yehW ← glycine betaine ABC transporter membrane subunit YehW
RA 2,219,424 G→A P20S (CCG→TCG)  osmF ← glycine betaine ABC transporter periplasmic binding protein OsmF
RA 2,237,916 C→T G458G (GGG→GGA)  mglA ← D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit
RA 2,242,121 A→G S283P (TCG→CCG)  yeiB ← DUF418 domain‑containing protein YeiB
RA 2,250,928 C→T A30V (GCC→GTC)  nfo → endonuclease IV
RA 2,269,634 C→T intergenic (+67/‑345) lpxT → / → mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
RA 2,281,604 C→T L325L (CTG→TTG)  radD → putative DNA repair helicase RadD
JC JC 2,319,850 IS2 (+) +5 bp coding (23‑27/2850 nt) rcsC ← histidine kinase RcsC
RA 2,397,444 G→A Q908* (CAA→TAA)  nuoG ← NADH:quinone oxidoreductase subunit G
MC JC 2,558,699 Δ6,790 bp intZ–[eutA] intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA]
RA 2,669,397 G→A P122P (CCG→CCA)  hcaE → putative 3‑phenylpropionate/cinnamate dioxygenase subunit alpha
RA 2,670,747 C→T L120L (CTG→TTG)  hcaF → putative 3‑phenylpropionate/cinnamate dioxygenase subunit beta
RA 2,679,297 G→A A24V (GCC→GTC)  yphF ← putative ABC transporter periplasmic binding protein YphF
RA 2,686,511 G→A G226D (GGT→GAT)  hmp → nitric oxide dioxygenase
RA 2,693,412 G→A S711F (TCT→TTT)  purL ← phosphoribosylformylglycinamide synthetase
RA 2,718,414 G→A P39S (CCA→TCA)  yfiF ← putative methyltransferase YfiF
RA 2,743,911 G→A G96D (GGT→GAT)  yfiB → lipoprotein YfiB
RA 2,744,234 G→A Y99Y (TAC→TAT)  rplS ← 50S ribosomal subunit protein L19
RA 2,746,630 G→A A389V (GCT→GTT)  ffh ← signal recognition particle protein component
RA 2,747,072 G→A L242F (CTT→TTT)  ffh ← signal recognition particle protein component
RA 2,755,115 G→A A74T (GCC→ACC)  smpB → SsrA‑binding protein
RA 2,755,691 G→A noncoding (99/363 nt) ssrA → tmRNA
RA 2,773,451 C→T T45I (ACC→ATC)  yfjW → uncharacterized protein YfjW
RA 2,890,781 G→A A373V (GCC→GTC)  cysJ ← sulfite reductase, flavoprotein subunit
RA 2,905,434 G→A intergenic (‑16/‑123) queE ← / → yqcG putative 7‑carboxy‑7‑deazaguanine synthase QueE/cell envelope stress response protein YqcG
RA 2,918,257 G→A R377C (CGC→TGC)  gudD ← D‑glucarate dehydratase
RA 2,923,067 G→A L240F (CTT→TTT)  truC ← tRNA pseudouridine(65) synthase
RA 2,927,037 G→A A244T (GCG→ACG)  ppnN → nucleotide 5'‑monophosphate nucleosidase
RA 2,933,521 G→A V56V (GTC→GTT)  fucA ← L‑fuculose‑phosphate aldolase
RA 2,941,269 G→A I121I (ATC→ATT)  ygdD ← DUF423 domain‑containing inner membrane protein YgdD
RA 2,947,061 G→A P40S (CCT→TCT)  mltA ← membrane‑bound lytic murein transglycosylase A
RA 2,947,457 G→A noncoding (71/77 nt) metZ → tRNA‑Met
RA 2,948,717 G→A I98I (ATC→ATT)  amiC ← N‑acetylmuramoyl‑L‑alanine amidase C
RA 2,970,117 G→A R152R (CGG→CGA)  mutH → DNA mismatch repair protein MutH
RA 2,972,092 G→A E166K (GAG→AAG)  tas → putative NADP(H)‑dependent aldo‑keto reductase Tas
RA 2,991,428 G→A G54D (GGT→GAT)  ygeG → TPR repeat‑containing putative chaperone YgeG
RA 3,012,355 G→A G299R (GGG→AGG)  yqeA → putative amino acid kinase YqeA
RA 3,014,594 G→A T155I (ACT→ATT)  yqeC ← uncharacterized protein YqeC
RA 3,016,932 G→A T291T (ACG→ACA)  ygfK → putative oxidoreductase, Fe‑S subunit
RA 3,017,169 G→A L370L (CTG→CTA)  ygfK → putative oxidoreductase, Fe‑S subunit
RA 3,024,034 G→A V907I (GTC→ATC)  xdhD → fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit
RA 3,031,709 G→A D115N (GAT→AAT)  uacT → urate:H(+) symporter
RA 3,106,841 C→T G376G (GGC→GGT)  nupG → nucleoside:H(+) symporter NupG
RA 3,171,233 C→T S250S (AGC→AGT)  qseC → sensor histidine kinase QseC
RA 3,185,899 C→T S162S (TCC→TCT)  ygiL → putative fimbrial protein YgiL
RA 3,208,637 G→A S205N (AGC→AAC)  ttdT → L‑tartrate:succinate antiporter
RA 3,209,831 G→A A238V (GCC→GTC)  tsaD ← N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit
RA 3,210,300 G→A P82S (CCT→TCT)  tsaD ← N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit
RA 3,268,970 A→G T186A (ACA→GCA)  yhaC → uncharacterized protein YhaC
RA 3,292,458 G→A intergenic (+26/+17) yraK → / ← rsmI putative fimbrial adhesin YraK/16S rRNA 2'‑O‑ribose C1402 methyltransferase
RA 3,298,037 C→T W34* (TGG→TGA)  yraQ ← permease family protein YraQ
RA 3,302,451 C→T L323F (CTT→TTT)  ubiU → ubiquinone biosynthesis protein UbiU
RA 3,308,003 G→A intergenic (‑70/+37) yrbN ← / ← nlpI uncharacterized protein YrbN/lipoprotein NlpI
RA 3,323,623 G→A R150C (CGT→TGT)  glmM ← phosphoglucosamine mutase
RA 3,325,492 G→A P482S (CCG→TCG)  ftsH ← ATP‑dependent zinc metalloprotease FtsH
RA 3,330,556 G→A intergenic (+160/+26) dacB → / ← obgE peptidoglycan DD‑endopeptidase DacB/GTPase ObgE
RA 3,334,592 G→A A295T (GCC→ACC)  ispB → all‑trans‑octaprenyl‑diphosphate synthase
RA 3,335,729 G→A P256S (CCA→TCA)  murA ← UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA 3,358,749 G→A G1342D (GGC→GAC)  gltB → glutamate synthase subunit GltB
RA 3,360,172 G→A M325I (ATG→ATA)  gltD → glutamate synthase subunit GltD
RA 3,372,767 G→A C270C (TGC→TGT)  nanA ← N‑acetylneuraminate lyase
RA 3,380,435 G→A S82N (AGC→AAC)  zapG → Z‑ring associated protein G
RA 3,390,086 G→A W189* (TGG→TGA)  aaeR → DNA‑binding transcriptional activator AaeR
RA 3,404,851 G→A intergenic (+393/‑585) yhdH → / → accB acrylyl‑CoA reductase/biotin carboxyl carrier protein
RA 3,486,205 C→A T29K (ACG→AAG)  crp → DNA‑binding transcriptional dual regulator CRP
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
JC JC 3,737,137 IS2 (+) +5 bp coding (37‑41/825 nt) bax ← putative glycoside hydrolase Bax
RA 3,832,474 G→A F688F (TTC→TTT)  yicI ← alpha‑D‑xyloside xylohydrolase
JC JC 4,123,923 IS2 (–) +5 bp coding (530‑534/1026 nt) cytR ← DNA‑binding transcriptional repressor CytR
JC JC 4,135,180 IS2 (–) +5 bp coding (1346‑1350/2181 nt) katG → catalase/hydroperoxidase HPI
RA 4,146,163 G→A R723R (CGG→CGA)  pflD → putative formate acetyltransferase 2
RA 4,146,389 (T)6→7 coding (132/879 nt) pflC → putative pyruvate formate‑lyase 2 activating enzyme PflC
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA 4,302,823 G→A L86L (CTG→TTG)  mdtO ← putative multidrug efflux pump subunit MdtO
RA 4,513,455 G→A A285V (GCT→GTT)  fecB ← ferric citrate ABC transporter periplasmic binding protein
JC JC 4,536,236 IS5 (+) +4 bp intergenic (‑2183/‑358) topAI ← / → ythB toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB
RA 4,542,683 Δ1 bp intergenic (+50/‑432) fimE → / → fimA regulator for fimA/type 1 fimbriae major subunit
RA 4,575,050 C→T intergenic (+1119/+1862) yjiT → / ← mcrC putative uncharacterized protein YjiT/Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 164561 164635 75 2 [1] [1] 2 hrpB/mrcB RNA‑dependent NTPase HrpB/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
* * ÷ NC_000913 288239 288344 106 2 [1] [1] 2 yagH putative xylosidase/arabinosidase
* * ÷ NC_000913 319761 319783 23 2 [1] [1] 2 rclA cupric reductase RclA
* * ÷ NC_000913 388644 388762 119 2 [0] [1] 2 [tauD]–[hemB] [tauD],[hemB]
* * ÷ NC_000913 436466 436514 49 2 [1] [1] 2 thiL thiamine monophosphate kinase
* * ÷ NC_000913 624559 624618 60 2 [1] [0] 2 fepB/entC ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
* * ÷ NC_000913 1196310 1211447 15138 2 [0] [1] 2 [icd]–mcrA [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA
* * ÷ NC_000913 1217728 1217793 66 2 [1] [1] 2 pdeG putative c‑di‑GMP phosphodiesterase PdeG
* * ÷ NC_000913 1248539 1248593 55 2 [0] [1] 2 dhaM dihydroxyacetone kinase subunit M
* * ÷ NC_000913 1303503 1303562 60 2 [1] [1] 2 oppB murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
* * ÷ NC_000913 1311131 1311274 144 2 [1] [1] 2 tonB Ton complex subunit TonB
* * ÷ NC_000913 1573312 1573346 35 2 [1] [1] 2 pqqL periplasmic metalloprotease
* * ÷ NC_000913 1978495 1979270 776 8 [0] [0] 9 insB5–insA5 insB5,insA5
* * ÷ NC_000913 2201870 2201882 13 2 [1] [1] 3 yehI DUF4132 domain‑containing protein YehI
* * ÷ NC_000913 2269880 2269957 78 6 [0] [1] 2 lpxT/mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
* * ÷ NC_000913 2311845 2311941 97 2 [1] [1] 2 ompC outer membrane porin C
* * ÷ NC_000913 2325540 2325582 43 2 [1] [1] 2 atoE short chain fatty acid transporter
* * ÷ NC_000913 2390257 2390303 47 2 [1] [1] 2 nuoN NADH:quinone oxidoreductase subunit N
* * ÷ NC_000913 2523454 2523527 74 2 [1] [1] 2 xapB xanthosine:H(+) symporter XapB
* * ÷ NC_000913 2578980 2579031 52 2 [1] [1] 2 talA transaldolase A
* * ÷ NC_000913 2581242 2581315 74 2 [1] [1] 2 tktB transketolase 2
* * ÷ NC_000913 2633236 2633324 89 2 [1] [1] 2 guaB inosine 5'‑monophosphate dehydrogenase
* * ÷ NC_000913 2666045 2666073 29 2 [1] [0] 11 csiE stationary phase‑inducible protein CsiE
* * ÷ NC_000913 2858775 2858858 84 2 [1] [1] 2 mutS DNA mismatch repair protein MutS
* * ÷ NC_000913 3228189 3228243 55 2 [1] [1] 2 ygjJ protein YgjJ
* * ÷ NC_000913 3239600 3239681 82 2 [1] [1] 2 alx/sstT putative membrane‑bound redox modulator Alx/serine/threonine:Na(+) symporter
* * ÷ NC_000913 3423763–3424212 3424447–3424239 28–685 2 [1] [1] 2 [rrfD]–[rrlD] [rrfD],[rrlD]
* * ÷ NC_000913 3660624 3660665 42 2 [1] [1] 2 mdtF multidrug efflux pump RND permease MdtF
* * ÷ NC_000913 3682245 3682325 81 2 [1] [1] 2 dctA C4 dicarboxylate/orotate:H(+) symporter
* * ÷ NC_000913 3716867 3716907 41 2 [0] [1] 2 yiaD PF13488 family lipoprotein YiaD
* * ÷ NC_000913 3903223 3903290 68 2 [1] [1] 2 bglB 6‑phospho‑beta‑glucosidase B
* * ÷ NC_000913 3998071 3998116 46 2 [1] [1] 2 uvrD DNA helicase II
* * ÷ NC_000913 4070458 4070507 50 3 [1] [1] 2 yihR/yihS putative sulfoquinovose mutarotase YihR/sulfoquinovose isomerase
* * ÷ NC_000913 4223245 4223276 32 2 [1] [1] 2 iclR DNA‑binding transcriptional repressor IclR
* * ÷ NC_000913 4279034 4279063 30 2 [1] [1] 2 ghxP guanine/hypoxanthine transporter GhxP
* * ÷ NC_000913 4549089 4549242 154 2 [1] [1] 2 fimH type 1 fimbriae D‑mannose specific adhesin
* * ÷ NC_000913 4549845 4549884 40 2 [1] [1] 2 fimH/gntP type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 279163 =NA (NA)11 (1.100) 11/322 0.0 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 2666074 = 0 (0.000)coding (640/1281 nt) csiE stationary phase‑inducible protein CsiE
* ? NC_000913 381260 =NA (NA)11 (1.100) 8/322 0.1 NA noncoding (1/1331 nt) IS2 repeat region
?NC_000913 = 382183 NA (NA)noncoding (924/1331 nt) IS2 repeat region
* ? NC_000913 382179 =NA (NA)14 (1.420) 11/318 0.0 NA noncoding (920/1331 nt) IS2 repeat region
?NC_000913 = 382590 NA (NA)noncoding (1331/1331 nt) IS2 repeat region
* ? NC_000913 = 1397238NA (NA)8 (0.800) 6/322 0.3 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 1978494 0 (0.000)intergenic (‑297/+24) flhD/insB5 DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB
* ? NC_000913 1978503 =NA (NA)18 (1.810) 17/320 0.0 90.0% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 2406787 2 (0.200)intergenic (‑146/‑774) lrhA/alaA DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA
* ? NC_000913 1979271 =0 (0.000)9 (0.900) 8/322 0.1 100% intergenic (‑56/‑482) insA5/uspC IS1 family protein InsA/universal stress protein C
?NC_000913 = 2102947 NA (NA)pseudogene (443/446 nt) wbbL interrupted rhamnosyltransferase WbbL
* ? NC_000913 = 22698790 (0.000)6 (0.600) 5/322 0.4 100% intergenic (+312/‑100) lpxT/mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region