Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,319,850 IS2 (+) +5 bp coding (23‑27/2850 nt) rcsC ← histidine kinase RcsC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2068941 =NA (NA)18 (1.800) 14/322 0.0 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 2319850 = 0 (0.000)coding (27/2850 nt) rcsC histidine kinase RcsC
* ? NC_000913 = 23198540 (0.000)13 (1.300) 11/322 0.0 100% coding (23/2850 nt) rcsC histidine kinase RcsC
?NC_000913 = 2997691 NA (NA)noncoding (1/1331 nt) IS2 repeat region

CGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2069150‑2068941
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACG  >  NC_000913/2319850‑2320071
                                                                                                                                                                                                                                                                                                                                                                                                                                                
CGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCC                                                                                                                                                                                       >  1:56656/1‑251
                                    GCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATGTCAAAGGGGCGAAGCGCCGCCTCAGGTGCCCGATGGAGTGTGGTTAAGGTAcc                                                                                                                                                    <  1:211064/250‑3
                                     CCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATATCGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAGATCTTCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGAGGTCTGTAAAGATAGGGGCAAAGCGAAGTACTAAAATAAGCAGTATATTTCTAAGGGGCGAAGCCCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGG                                                                                                                                                  <  1:138119/251‑1
                                                          GCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGTATCCGCATAGTGCGCTGGGTTAGCGCTCGCCTCTGGAATATCTGCTGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAATGTATTTTAAAGGGGCGAAGCTCTGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATn                                                                                                                             <  1:43499/251‑2
                                                           CAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATCACGAATAGCATCCGCATATTGCGCTGGGCTATCGCTCGCCACGGGACTATCTGCGGCAGAGGACTTGAAATGGGTTAAGTGATAACAGATGTCTGGAACTATAGGGGCAAATCCATGTACGGAAAGAAGCAAGGTATTTCCAAGGGGCGAAGCTCCGCCACAGGTGACCGATCGAGTGTGGTTAAGGTAGCGGTAACAGAGTGTTACCGCAATGT                                                                                                                            >  1:34122/1‑251
                                                                AAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAAGATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGGATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGTCCGATGGAGTGTTGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCT                                                                                                                       <  1:121117/251‑1
                                                                                 GTTCGAGCATTATAACGAATGGCATCCGCATCGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGAT                                                                                                      >  1:71621/1‑251
                                                                                    nGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATAC                                                                                                    >  1:40181/2‑250
                                                                                      AGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAA                                                                                                                                                                                                                   >  1:121383/1‑137
                                                                                                                                 CTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTG                                                                                                                                        <  1:205315/169‑1
                                                                                                                                     CCACGTGAATATCTGCGGCAGCGTGCTTGTAATGGGTTAAGTGATAACAGATGTGTGTAAATATAGGGGCAAATCCATGTACGAAAAGAATCAAGGTATTTCAAAGGGGCGAAGCTCCTCCTCAGGTTACAGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTAC                                                                                                                                    <  1:164273/169‑1
                                                                                                                                     CCACGNNAANNNCTNNGGCAGCGGGCTTGTAATGGGTTANGTGATAACAGATGTCTGGAAATATAGGAGNANANCCATNNACGNAAGGAAGCAANGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGAGACCGATGGAGTGTGGNTNAGGTAGCGGTAAACGCGTGTTAC                                                                                                                                    >  2:164273/1‑169
                                                                                                                                                     GGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATACATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCG                                                                                                                                                                                      >  1:159417/1‑103
                                                                                                                                                             GCTTGTAATGGGTTAAGTGATAACAGATGTCTGGCAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGANNCTCCGCNNC                                                                                                                                                                                  >  2:4889/1‑99
                                                                                                                                                             GCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCG                                                                                                                                          >  1:203279/1‑139
                                                                                                                                                              CTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATG                                                                                                                             <  1:45008/151‑1
                                                                                                                                                                   AATGGGTTAAGGGATAGAAGATGTCTGGAAATATAGGGGGAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGTTTAAGGTGGCGGTAAAAGCGTGTAACCGCAAGTTTTTCTCGTTTCTGGAATATGATACACCGCCGAGAAATCATCTCCTTAACCTCTGATAATCGTCATATACCGGACTAGACTAGTGGATTTCAGCATGCATTATAT                    <  1:91095/251‑1
                                                                                                                                                                                     AGATGTCTGGAAATATAGGGGCAAATCCATGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACG  <  1:139101/251‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                
CGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2069150‑2068941
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACG  >  NC_000913/2319850‑2320071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.