| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,575,050 | C→T | intergenic (+1119/+1862) | yjiT → / ← mcrC | putative uncharacterized protein YjiT/Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,575,050 | 0 | C | T | 87.5% | 15.9 / ‑6.1 | 8 | intergenic (+1119/+1862) | yjiT/mcrC | putative uncharacterized protein YjiT/Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (3/4); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCTGCAACCGGTGGGAAAGCCGCGACTATCCTGGTATCCCGAACCTGGACGGAGATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGCCGGTTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTG > NC_000913/4574817‑4575273 | atgccaatgccGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCGGCAACCGGTGTGAAAGCCGCGACTATCCTGGTATCCCGAGCCTGGACGGATATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGTCGGTTCTGCAAtatacc < 1:203946/251‑3 (MQ=255) ccAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGACATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCTGCAACCGGTGGGAAAGCCGCGACTATCCTGGTATCCCGAACCTGGACGGAGATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGTCGGTTCTGCAATATAACCATTa > 1:153821/1‑226 (MQ=255) cGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCTGCAACCGGTGGGAAAGCCGCGACTATCCTGGTATCCCGAACCTTGACGGAGATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGTCGGTTCt < 1:189203/205‑1 (MQ=255) gCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCTGCAACCGGTGGGAAAGCCGCGACTATCCTGGTATCCCGAACCTGGACGGAGATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGTCGGTTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCgg < 1:176830/251‑1 (MQ=255) gACCAGGCGAAATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCTGCAACCGGTGGGAAAGCAGCGACAATCCTGGTATCCCGAACCTGGACGGAGATGGATAACGAGATTAAAGAGAGAGCCGATATACGCGGGCCGGTTCTGCAATCTAACCATTATCTTAAGCATGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCg > 1:151900/1‑251 (MQ=255) aaCAGGCTTATCAGGCTGCAACCGGTGGGAAAGCCGCGACTATCCTGGTATCCCGAACCTGGACGGAGATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGTCGGTTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGtt > 1:177087/1‑251 (MQ=255) nttAAAGAGAGAGCCGATATCCGCGGGTCGGTTCTGCAATATAACCATTCTCTTAAGACTGAAGAGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGCAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTACCAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGAGTAACGCTGGATGACTg > 1:20412/2‑251 (MQ=255) tAAAGAGAGATCCGATATCCGCGGGTCGGTTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAATTGATTATCGCTGGATGACTg < 1:167562/249‑1 (MQ=255) | ATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAGGCTGAACAGCTTGAACAGGCTTATCAGGCTGCAACCGGTGGGAAAGCCGCGACTATCCTGGTATCCCGAACCTGGACGGAGATGGTTAACGAGCTTAAAGAGAGAGCCGATATCCGCGGGCCGGTTCTGCAATATAACCATTATCTTAAGCCTGAAGTGTTTAATGAAAACGGCGGCCCCCTTAAGCTTTCTGAAATGTTGTTGTTCCGGGAATTCATGCGTCGCCCTAAACGGACTAACAGCCTGGAAACACAGGGGCTGGTTCAGGTTGGTTACCAGGGGCTGGAGAAAATACATAAGAGCCCCTTGCACTGGCAGGAAAAAGGATTAACGCTGGATGACTG > NC_000913/4574817‑4575273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |