| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,024,034 | G→A | V907I (GTC→ATC) | xdhD → | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,024,034 | 0 | G | A | 94.4% | 41.8 / NA | 18 | V907I (GTC→ATC) | xdhD | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (7/10); minor base C (1/0); total (8/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
GAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCCACCCTGCGTGCTATCGGCCACAGTATGAGCGAAGAGATCATTTATGACGCCGAAGGTCACCCGTTAACGCGTGATTTACGCAGTTACGGCGCACCGAAAATTGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGTGCCGAGCGACGATAAAGTCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTC > NC_000913/3023794‑3024278 | gAAAGCCGCCTTGATAAATTCTTCGCGTTGCGTGCCTGCGGTACACCGGTCAATCCAGAGTTAGTGGTGGGACAAATCTACGGTGCCCCCCGTCGTGCTATCTGCCGCAGTAGGAGCGAAGAGATCATGTATGACTCCGAAGGTTATCCGTTAACTCGTGATTTACGCAGGGTCTGCGCACCTAAAATGGGTGACATTCCTCGTGATTTCCTCGCTGTGCTGGTGCCGAGCGACGATAAAATCGGCCCGtt < 1:151809/251‑1 (MQ=255) tCTACGCCTTGCTGGACTGCGGGACACCGGTCAATCCAGAGTTATCGTTGGGACAAATCTACGGTGCCACCCTGCGTGATATCGGCCACAGTATGAGCGAAGAGATCATTTATGACGCCGAAGGTCACCCGTTAACGCGTGATTTACGCAGTTACGGCGCACCGAAAATTGGTGACATTCCGCGTGATTCCCGCGCTGTGCTGGGGCCGAGCGACGATAAAATCGGCACGTTCGGGGCGAAATCGAtctc < 1:14707/250‑1 (MQ=255) gCGTTGGGACAAATCTACGGTGCCACCCTGCGTGCTATCGGCCACAGTATGAGCGAAGAGATCATTTATGACGCCGAAGGTCACCCGTTAACGCGTGATTTACGCAGTTACGGCGCACCGAAAATTGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGTGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCgg > 1:146168/1‑235 (MQ=255) ccgatttATCGGCAACAGTATGAGCGAAGAGATCATGTATGACGCCGAAGGTCACCCGTGAACGCGTGATGTACGCAGTTACGGCGCACCGAAAATGGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGGGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCTAAATCGATCGCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGAGTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTAcgc < 1:147091/244‑1 (MQ=255) gTATGAGCGAAGAGATCATTTATGACGGCGAAGGTCACCCGTTAACGCGTGATTTACGCAGTTACGGCGCACCGAAAATTGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGGGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCACGCGGCATCTCGTTACGCGAATGGCATTTCACACCg < 1:176065/251‑1 (MQ=255) gACGCCGAAGGTCACCCGTTAACGCGTGATTTACGCAGTTACGGCGCACCGAAAATTGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGTGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCg < 1:56716/196‑1 (MQ=255) cGAAAATTGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGTGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCTGCGGCCTGTTTCTCTGTTTg < 1:167095/251‑1 (MQ=255) gAAAATTGGTTACATGCCGCGTGATTTCCTCGCTGTGCGGGTGCCGCGCGACGAGAAAATCGGCCCGGTCGGGGGTAAAGCGTTTTCTGAAATCGGTGGAACAGGCGCTGCTCCGTCGATTGCTACCGCAATTCACGATGCATGCGGTATCTGGTTAc < 1:37695/158‑1 (MQ=255) ccGCGCTGTGCTGGTGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGCAATCGGTGTAACTGGCGCAGCTCCGGCGATTGCTCCCGCAATTCAc > 1:201809/1‑109 (MQ=255) cgcTGTGCTGGTGCCGCGCGCCGATAAACTCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGCTTGCTACCGCACTTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATg > 1:70419/1‑250 (MQ=255) tGGTGCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATg < 1:121342/127‑1 (MQ=255) gCCGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTtc < 1:30436/251‑1 (MQ=255) ccGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTtct > 1:13690/1‑251 (MQ=255) cGAGCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCGCGGAAATCGGTGTAAAGGGCTCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGTCATATCACTCCGGAGAAAAGACTCGCTGCGCTGGAAAAAATAGAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGttt < 1:32670/205‑1 (MQ=255) gCGACGATAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCa > 1:213891/1‑249 (MQ=255) naTAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTc > 1:135456/2‑251 (MQ=255) gaTAAAATCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCCGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCCTCTGGTTACGCGAATGGCATTTCACACCGGTGAAAATACTCACTGCGCTGGACAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTc > 1:112418/1‑251 (MQ=255) gaTAAAATCGGCCCGTTCGGGGAGAAATGGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAACATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTc > 1:181598/1‑251 (MQ=255) | GAAATCCGCCTGGATAAATTCTACGCCTTGCTGGACTGCGGTACACCGGTCAATCCAGAGTTAGCGTTGGGACAAATCTACGGTGCCACCCTGCGTGCTATCGGCCACAGTATGAGCGAAGAGATCATTTATGACGCCGAAGGTCACCCGTTAACGCGTGATTTACGCAGTTACGGCGCACCGAAAATTGGTGACATTCCGCGTGATTTCCGCGCTGTGCTGGTGCCGAGCGACGATAAAGTCGGCCCGTTCGGGGCGAAATCGATCTCGGAAATCGGTGTAAATGGCGCAGCTCCGGCGATTGCTACCGCAATTCACGATGCATGCGGCATCTGGTTACGCGAATGGCATTTCACACCGGAGAAAATACTCACTGCGCTGGAAAAAATATAAATAATAAATGGCCGCTTCGGCGGCCTGTTTCTCTGTTTGAACGATGACTAAATAGTGACTGCGAAAATGAGATAAGCCGTTCTCAAGGCGTC > NC_000913/3023794‑3024278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |