| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,457,440 | C→T | C337C (TGC→TGT) | paaE → | phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,457,440 | 0 | C | T | 87.5% | 13.0 / NA | 8 | C337C (TGC→TGT) | paaE | phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (2/5); minor base G (0/1); total (2/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATTGCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGCCAGGCACTGCCGCTGACCAGCGATGTGGTGGTTGACTTTGACGCGAAGGGGATGGCATGAGCGAACTGATCGTCAGCCGTCAGCAACGAGTATTGTTGCTGACCCTTAACCGTCCCGCCGCACGTAATGCGCTAAATAATGCCCTGCTGATGCAACTGGTAAATGAACTGGAAGCTGCGGCTACCGATACCAGCATTTCGGTCTGTGTGATTACCGGTAATGCACGCTTTTTTGCCGCTGGGGC > NC_000913/1457203‑1457684 | aagggACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATTGCGCCAGGGAGCGGATCTGCCCTATGGCTGCAAAGGCGGCGGCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGTAAACCAATTCCTGTCTGGATCCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGTCAGGCACTGCCGc < 1:215735/247‑1 (MQ=255)aaGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATTGCGCCAGGGAGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTTCGACCTTCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGTCAGGCACTGCCGc < 1:215738/251‑1 (MQ=255) tGACGGACAAAAAGTGACTGTACGTCAGGATGAGCGGGATCGGGAAATCGTGCTTAATGCAGACGATGAAAGAATTCTCGATGCGGCATTGCGCCAGGGGGCGGATCTGCCCTATGACTGCAAAGGCGGCGTCTGTGCGACATGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGTCAGGCACTGCCGCTg > 1:177266/1‑250 (MQ=255) gCGGCATTGCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGTCAGGCACTGCCGCTGACCAGCGATGTGGTGGTTGACTTTGACGCGAAGGGGATGGCATGAGCGAACTGATCGTCAGCCGTCAGCAACGAGTAttgttg < 1:167681/251‑1 (MQ=255) ggCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGTCAGGAACTGCCGCTGACCAGCGATGTGGTGGTTGACTTTGACGCGAAGGGGCTGGCATGAGCGAAATGATcgtcagc > 1:117031/1‑149 (MQ=255) cGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTAGGTGTTGAGTTGGCAGGCACTGCCGCTGACCAGCGGTGTGGGGGTTGACTTTGACGCGAAGGGGATGGCACGAGCGAACGGATCGGCAGCCGTCAGCAACGAGTATTGTTGCTGAGCCTTAACCGTCCCGCCGCACGTAATGCGCTAAATAATGCCCTGCTGATGCAAc < 1:200380/218‑1 (MQ=255) gtTGAGTTGTCAGGCACTGCCGCTGGCCAGCGATGTGGTGGTTGACTTTGACGCGAATGGGATGGCATGAGCGAACTGATcgtcagccgtn < 1:21797/91‑2 (MQ=255) gAGTTGTCAGGCACTGCCGCTGACCAGCGATGTGGTGGTTGACTTTGACGCGAAGGGGATGGCATGAGCGAACTGATCGTCAGCCGTCAGCAACGAGTATTGTTGCTGACCCTTAACCGTCCCGCCGCACGTAATGCGCTAAATAATGCCCTGCTGATGCAACTGGTAAATGAACTGGAAGCTGCGGCTACCGATACCAGCATTTCGGTCTGTGTGATTACCGGTAATGCACGCTTTTTTGCCGCTGGGGc < 1:28033/251‑1 (MQ=255) | AAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATTGCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGCCAGGCACTGCCGCTGACCAGCGATGTGGTGGTTGACTTTGACGCGAAGGGGATGGCATGAGCGAACTGATCGTCAGCCGTCAGCAACGAGTATTGTTGCTGACCCTTAACCGTCCCGCCGCACGTAATGCGCTAAATAATGCCCTGCTGATGCAACTGGTAAATGAACTGGAAGCTGCGGCTACCGATACCAGCATTTCGGTCTGTGTGATTACCGGTAATGCACGCTTTTTTGCCGCTGGGGC > NC_000913/1457203‑1457684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |