New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2269879	0 (0.000)	6 (0.600)	5/322	0.4	100%	intergenic (+312/‑100)	lpxT/mepS	lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAA  >  NC_000913/2290019‑2290341                                                                                               |                                                                                                                                                                                                                                     gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAACTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAgn                                                                                                                 <  1:129745/212‑2 (MQ=255) gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGANAAANNNNNAcnnnnnnnnnn                                                                                                                                                                           >  2:129745/1‑144 (MQ=18)                  gatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGATCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCTAAGTCAGTTTTTAAAAACTGTTTAAAGAAAtn                                                          <  1:24615/250‑2 (MQ=255)                                      gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCATAACGCTGTAGCCACCAGAACAGATATTTCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACATAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAATAAATGCACAAGTATTGtgattgat                                       <  1:65569/249‑1 (MQ=255)                                                 ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCATACTCATGCATTGAGCTTTCATCATATGAAATTAATTGCTGTTAAAAGCATTGGTTACAGAAAAGACCCATAGCTCCATACCCGGAGTCAGTTTTTAAACACTGTTTAAAGAAATGCACAAGTATTGTGATTGAGTTTTTAGTTGttt                          <  1:212381/251‑1 (MQ=255)                                                                       tatCAGNGNCNTNTTCGCACCTTCCATAANGCTTTAGcc                                                                                                                                                                                                                        >  2:204753/1‑39 (MQ=21)                                                                       tatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAgac                                                                                                                                                                                                                        <  1:204753/39‑3 (MQ=255)                                                                          cAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGCACAGATATTGCGGAACGACCAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATCCCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCaaa  >  1:118206/1‑250 (MQ=255)                                                                                         aCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTAATCCTATGAACTTAATTGCTGTTAAAAGCATTGGGTACAGAAACTACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAAc                                                                        >  1:164514/1‑165 (MQ=255)                                                                                         aCCTTCCATAACGCGGTAGNCNCCAGAACAGATATGGCGGAACGACAAAGAGAAACAGAACCAGATTGATNCATTGAGCTTNCATNNTATGNANTNAATTGCTGTTAAAAGCATTGGGTACAGAANATACCCATAGCTCCATACCCGGANNCANNNTGNNAAAAc                                                                        <  2:164514/165‑1 (MQ=255)                                                                                               |                                                                                                                                                                                                                                     GTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAA  >  NC_000913/2290019‑2290341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.