New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	9 (0.900)	8/322	0.1	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

TCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACT  >  NC_000913/1979053‑1979487                                                                                                                                                                                                                           |                                                                                                                                                                                                                         ccagccgtggggtaaaacagctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgtgacaagaaaatctctttgctggtctgacggctcgtactgctgaattcactgtcggagaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacacgatctcatatcagggactcggtcgcaccgtccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGgt                                                                                                                                                                                          >  1:152242‑M1/219‑251 (MQ=255)                                                 gtcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                                                                                          <  1:200189‑M1/81‑1 (MQ=255)                                                                           gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcgacgaaggtacgtcgatgcctcatgccgaacacagttctatggctacagatgacaaacatgatctcatatccgggacttgttagcaccttccttaaCATAACTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCACTCTGTTAAACAGTTTTTAGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                                                                                                <  1:192237‑M1/107‑1 (MQ=255)                                                                                        ctgggctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgcaccctgttctatggctccagatgaaaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                                                                                                    <  1:69634‑M1/119‑1 (MQ=255)                                                                                                           tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcacaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                                                                                                                                 >  1:218558‑M1/113‑186 (MQ=255)                                                                                                            gctgaattcactgtcggcgaaggtcagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttcaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata                                                                                <  1:48719‑M1/139‑1 (MQ=255)                                                                                                                      ctgtcggcgaaggtaagttgatgactcatgatgaacactgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                                                                                           <  1:183587‑M1/48‑1 (MQ=255)                                                                                                                          cggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataa                                                                  <  1:64519‑M1/153‑1 (MQ=255)                                                                                                                                                                                          ctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATAATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACt  <  1:70926‑M1/217‑1 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                         TCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACT  >  NC_000913/1979053‑1979487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.