mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 87 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,099 | 0 | A | . | 66.7% | 0.2 / 10.6 | 10 | intergenic (‑206/+85) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,457 | 0 | A | G | 66.7% | 15.5 / 10.6 | 19 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,385 | 0 | A | G | 62.5% | 8.3 / 10.8 | 17 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,724 | 0 | A | G | 61.9% | 13.3 / 12.9 | 21 | T226A (ACC→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,271 | 0 | G | A | 60.0% | 5.7 / 15.5 | 20 | H108H (CAC→CAT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,747 | 0 | G | C | 60.0% | 7.3 / 11.9 | 16 | A233A (GCG→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,767 | 0 | C | T | 60.0% | ‑1.6 / 10.5 | 15 | A240V (GCG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,692 | 0 | T | A | 58.3% | 10.1 / 20.7 | 24 | L215Q (CTA→CAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,702 | 0 | A | C | 58.3% | ‑1.7 / 21.7 | 24 | A218A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,708 | 0 | A | G | 58.3% | 15.0 / 16.8 | 24 | T220T (ACA→ACG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,714 | 0 | A | C | 58.3% | 1.8 / 20.2 | 24 | A222A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,285 | 0 | T | C | 57.9% | 9.9 / 12.3 | 19 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,732 | 0 | G | A | 57.1% | ‑6.1 / 12.5 | 16 | K228K (AAG→AAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,741 | 0 | A | G | 56.2% | 5.5 / 11.2 | 16 | E231E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,744 | 0 | T | C | 56.2% | 2.9 / 13.2 | 16 | A232A (GCT→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,750 | 0 | C | T | 56.2% | 0.7 / 13.0 | 16 | T234T (ACC→ACT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,753 | 0 | G | A | 56.2% | ‑2.0 / 12.1 | 16 | S235S (TCG→TCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,780 | 0 | A | G | 56.2% | 2.5 / 11.7 | 16 | E244E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,717 | 0 | A | C | 54.5% | ‑1.9 / 22.1 | 22 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,236 | 0 | T | A | 54.5% | ‑3.0 / 10.0 | 11 | L63* (TTG→TAG) | stfR | putative prophage side tail fiber protein StfR |