Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,744,751 Δ1 bp coding (1295/1374 nt) mdtK → multidrug efflux pump MdtK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,744,7510C.100.0% 47.1 / NA 13coding (1295/1374 nt)mdtKmultidrug efflux pump MdtK
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (5/8);  total (5/8)

CGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCT  >  NC_000913/1744541‑1744955
                                                                                                                                                                                                                  |                                                                                                                                                                                                            
cggTATATCAGATTTCTGACTCAATCCAGGTGATTGGAAGTAGGATTATGCGTGATTATAAAGATCCGCGTTCCATTTTCTATCTTACCTTTAAGGCTTACTGGGTGCTGGGCTTGCCACGCGGCTATATTCTGGCACTGCCCGATCTGGTCGTTGAAACTATGGGGCCAGCAGGCTTCTGGATAGGATTTATTATTGGACTGACGACGG‑AGCAATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTc                                                                                                                                                                     >  1:157198/1‑251 (MQ=255)
                                           gATTTTGCGTGGTTATAAAGATTCGCGTTCCTTTTTCTATATTACCTTTACGGCTTACGTGTTGCTGGTCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTGATTATTGGCCTGACGTCGG‑AGCCATTATGATGGTTGTGCGTATGGTGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAg                                                                                                                          <  1:29158/251‑1 (MQ=255)
                                                   gTGGTTATAAAGATACGCATTCCATTTTCTATATTACCTTTACGGCTTAATGGGGGCTAGGCTTGCAAAGCGGATATATTCTGGCACTGACCGATCTGGTCGTTAAACCTATGGGGCCAGCCGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTATGCAACGAGCATCCAGCTACTAAAGACAAGgcg                                                                                                                  >  1:209561/1‑251 (MQ=255)
                                                                   gcgTTCCATTTTCTATATTACCTTTACGGCTTACTGGGGGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGGCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTg                                                                                                  <  1:30704/251‑1 (MQ=255)
                                                                                 atatTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCtn                                                                                                                                                 <  1:63374/190‑2 (MQ=255)
                                                                                                        gTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGTCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTg                                                                                                                                                                            <  1:143818/140‑1 (MQ=255)
                                                                                                                    ccAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCGGCAACGTCTGCCGGCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTg                                                                                                  <  1:114454/202‑1 (MQ=255)
                                                                                                                                   cTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGATTTCTTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCCTCATTCTGCAACGAGCTTCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGATGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTc                                   >  1:218148/1‑250 (MQ=255)
                                                                                                                                     ggCNNTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTatgatgatg                                                                                                                                                                                              <  2:5247/93‑1 (MQ=255)
                                                                                                                                              cGATCTGGTCGTTGAACATATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGACATTATGATGATGTTGCg                                                                                                                                                                                         >  1:47889/1‑89 (MQ=255)
                                                                                                                                                       cGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCGTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTTCCGTCAGCCAGCATTCTGCAACGAGCATGCCGCTAATAAAGGCAAGGCGCTACCGTCACGGGTTGCGCCTGTATTTTTACGCTTGCTGTATCGTTGCGCCAATCCCGTCTTTGTCTGGCTGTAATTTCCGAGCGTTACACAGAGTTTGc              <  1:100979/251‑1 (MQ=255)
                                                                                                                                                       cGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTAGTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTg               <  1:198033/250‑1 (MQ=255)
                                                                                                                                                                   ggggCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCt  >  1:176267/1‑251 (MQ=255)
                                                                                                                                                                                                                  |                                                                                                                                                                                                            
CGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCT  >  NC_000913/1744541‑1744955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑