| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,298,037 | C→T | W34* (TGG→TGA) | yraQ ← | permease family protein YraQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,298,037 | 0 | C | T | 91.7% | 21.1 / ‑6.3 | 12 | W34* (TGG→TGA) | yraQ | permease family protein YraQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/6); minor base A (1/0); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGCAGCGTGCCGCGAAAGCGCGATTGCCCAAGCGTACGCAACAACCAGTCACGCGGGATCAGCACCTGAATCAACGAACCGAGGATCACCCCCAGCACCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCAAGGATAGATTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCCCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGACTGACCAGTCATAGCATTCCCCAGGAATAAGTTATGATAATTGAGCGCGTGAATATTACGCTCACTATCAATTCTTGGGAATAATTATTCAGCTCTTTTGCGTAATTCTGAAGAGCTTAAAATCGTCACGCCTTCATGCTCAGGCC > NC_000913/3297796‑3298272 | ccAGCAGCGTGCCGCGAAAGCGCGATTGCCCAAGCGTACGCAACAACCCGTCACGCGGGATCAGCACCTGAATCAACGAACCGAGGATCACCCCCAGCACCGCAGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCAAGGATAGATTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCACATTTcac > 1:145403/1‑250 (MQ=255) aGCGCGATGGCCCAAGCGTACGCAACACTCTGTCACGCGGGAACAGCACCGGAAGCAACGAACCGAGGATCACCCCCAGCACCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCTTAATCCAACTCCTCCTGCCATGGGTTAGCCTCCGCCTGCGCAAGGATAGATTTACCGATACTGGGGGTTGCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCTCATTTCACATACCAGAGACCGGCAATg < 1:154121/251‑1 (MQ=255) aacacccaggcccgcgGGATCAGCACCGGAATCAACGAACCGAGGACCACCCCCATCACCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCAAGGATAGATGTACCGATACTGTGGGGTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGGTCTCATTTCACATGCCAGAGACCGTCAATGACAACGAGAAAGAAAAGCGCggg < 1:178061/239‑1 (MQ=255) acCAGTCACGCGGGATCAGCACCTGAATCAACGAACCGAGGATCACCCCCAGCACCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCCAGGATCGATTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCTCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTc > 1:115255/1‑251 (MQ=255) aGTCAAGCGGGATCATCCCCATAACCAACGAACCGAGGAGCACCCCCAGCACCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTATCATCCGTCTGCGCAAGGATAGATTTACCGATACTGTGGGTTTCGGCGGCAGTAAACGCTTTGCCGTAGTAAGGTTCTCATTTCACATACCAGAGTCCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTccac < 1:196207/251‑1 (MQ=255) ggATCACCCCCAGCCCCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCAAGGATAGATTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCTCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGACTg > 1:171562/1‑250 (MQ=255) atcatcGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCAAGGATCGCTTTACCGATACTGTGGGTTTCGGCAGCCGTAAACGCTTTGCCGTAGTAAGGTTCTCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGACTGCCCAGTCATAGCATTCCCCAGGAATAAGTTATGATAATTGAgcgc > 1:98893/1‑251 (MQ=255) gcgTAATCCAACGCCGCCTGCCATGGGTTAGCATCCACCTGCGCAAGGAGAGAGTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTGCTCATGTCACATACCAGAGACCGGCAATGACAACTAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTgccgc < 1:218511/185‑1 (MQ=255) cAAGGATAGATTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCTCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGACTGACCAGTCATAGCATTCCCCAGGAATAAGTTATGATAATTGAGCGCGTGAATATTACGCTCACTATCAATTCTTGGGAATAATTATTCAGCTCtt < 1:108714/251‑1 (MQ=255) gccGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGACGTAGTAAGGTCCTCATTTCACATACCAGCGAACGGCAATGACACCGCGAAGGCAAACCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGAATGACCAGCCATAGCATTCCCACGCAATAAGTTCTGATAATTAAGAGCGTGAAAATTAGGCCCACTATCAATCCTTGGGAATAATTATTCAGCTCTTTTGCGTattttt > 1:91830/2‑245 (MQ=255) gtagtaAGGTTCTCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCNNCTGAGANNa > 2:4049/1‑99 (MQ=255) gtagtaAGGTTCTCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGACTGACCAGTCATAGCATTCCCCAGGAATAAGTTATGATAATTGAGCGCGTGAATATTACGCTCACTATCAATTCTTGGGAATAATTATTCAGCTCTTTTGCGTAATTCTGAAGAGCTTAAAATCGTCACGCCTTCATGCTCAGGcc < 1:4049/248‑1 (MQ=255) | CCAGCAGCGTGCCGCGAAAGCGCGATTGCCCAAGCGTACGCAACAACCAGTCACGCGGGATCAGCACCTGAATCAACGAACCGAGGATCACCCCCAGCACCGCCGCTTTCCATACCGCGAGGAAATAGATCATCGCGTAATCCAACGCCGCCTGCCATGGGTTAGCATCCGCCTGCGCAAGGATAGATTTACCGATACTGTGGGTTTCGGCAGCAGTAAACGCTTTGCCGTAGTAAGGTTCCCATTTCACATACCAGAGACCGGCAATGACAACGAGAAAGAAAAGCGCGGGTTTCCACCACTGAATGGGCGTTGCCGCCTGAGATGAAGACTGACCAGTCATAGCATTCCCCAGGAATAAGTTATGATAATTGAGCGCGTGAATATTACGCTCACTATCAATTCTTGGGAATAATTATTCAGCTCTTTTGCGTAATTCTGAAGAGCTTAAAATCGTCACGCCTTCATGCTCAGGCC > NC_000913/3297796‑3298272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |