Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,428,903 C→T pseudogene (108/189 nt) lomR → Rac prophage; protein LomR_1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,428,9030CT100.0% 25.9 / NA 12pseudogene (108/189 nt)lomRRac prophage; protein LomR_1
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (5/7);  total (5/7)

GAATTCACTATCGGCGAAGGTGAGTTGATGGCTCATGATGTCCCTCTGGGATGCGCTCCGGATGAATATGATGATCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAAC  >  NC_000913/1428691‑1429135
                                                                                                                                                                                                                    |                                                                                                                                                                                                                                        
gAATTCACTATCGGCGAAGGTGAGTTGATGGCTCATGATGTCCCTCTGGGATGCGCTCCGGATGAATATGATGATCTCATATCAGGAACTTGTTCGCCCCTTCCCCAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGGGGCTATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGAc                                                                                                                                                                                                      <  1:180593/249‑1 (MQ=255)
                                                    gngcTCCGGATGAATCTGATGATCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCTATTGATATTg                                                                                                                                                                                                                                >  1:169316/1‑171 (MQ=255)
                                                                                                          aGGGGAAAACGCACGACGTGCTGACCTGAAGCGAGGACGATCGCCACAGCAACCCGTCTCTGCCGTGGGTACCTGGCGTGCAGTTTAACCCGACCTAAGCCGGGGCTATTGATATTGCGAATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGTGTGTCgg                                                                                                                                                                      <  1:70410/175‑1 (MQ=255)
                                                                                                             ggAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCTATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAatat                                                                                       >  1:150321/1‑251 (MQ=255)
                                                                                                                                                ngTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGCCGTGCAGTTTACCCCGACCGAATCCGTGGCTCTTGCTATTGCTTATGCAGGCCACGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGGAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGc                                                     >  1:20944/2‑250 (MQ=255)
                                                                                                                                                             acacGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCTATTGATATTGCTTATGAAGGcccc                                                                                                                                                                                                                  <  1:87121/80‑1 (MQ=255)
                                                                                                                                                             acacGTCTCTGGCGGGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCTATGGATAGTGCTTATGAAGGCCCCGGCAGGGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCTGTTCAGGCGTGCTTTTTTGTGGGTTGAATATGGCAGTAAAGATTTCAGGTTTACTGAAATACGGCACAGGAAAACCGGt                                       <  1:68324/251‑1 (MQ=255)
                                                                                                                                                             acacGNCTCTGNCNNGGGGAGCTGGCGTGCAGTTNAACCCGACCGAATCCNTGGCNATTGANATNg                                                                                                                                                                                                                                >  2:87121/1‑66 (MQ=255)
                                                                                                                                                                             gggAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCTATTGATATTGCTTATGATGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTTATCGTGGGTGTCGGTGAGAAGTGCTGATTAGCCAGGTAACACATTGTTATGACAGCCCGCCGGTTCAGGGGGGCTGTTTTGTGGGGTGAAGATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATc                       <  1:81637/251‑1 (MQ=255)
                                                                                                                                                                                         gCAGTTTAACCCGACCGAATCCGTGGCTATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGCCGATTTCATCGTGGGTGTCGGTTATAAGTTCTGCTTAGCCAGGTAACACCGTGTTATGACAGCCCGCCGCTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGAAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACCGAACTGCACAATACAGCTGAAAGc            >  1:113658/1‑250 (MQ=255)
                                                                                                                                                                                                  cccgcccgAATCCGGGGTTATTGATATTGCTTATGAAGGCCCCGTCAGTTGCTTCTGGCGCACTGCCGGGTTCATCGTGGGGTTCGGTTATAAGGTCTGATTAGCCAGGTAATACATTGTTATGACAGCCCGCCTGTTCAGGCGGTCTTTGTTGTGGTGTGAATATGGTGGTATAGATTTCGGGGGGATTGAAAGACTGCATTGGAAAACCGTTACAGAACTGCGCAATCCAGCTGAAAGCAAAACGTAAc  <  1:103545/251‑1 (MQ=255)
                                                                                                                                                                                                     naccgaATCCGTGGCTATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGcc                                                                                                                           >  1:130775/2‑127 (MQ=255)
                                                                                                                                                                                                     gaccgaATCCGTGGCTATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGcc                                                                                                                           <  2:130775/127‑1 (MQ=255)
                                                                                                                                                                                                                    |                                                                                                                                                                                                                                        
GAATTCACTATCGGCGAAGGTGAGTTGATGGCTCATGATGTCCCTCTGGGATGCGCTCCGGATGAATATGATGATCTCATATCAGGAACTTGTTCGCACCTTCCCAAGGGGAAAACGCACGACGTGCTGACCGGAAGTGATGACGGTCGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAAC  >  NC_000913/1428691‑1429135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑