| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,165,680 | G→A | E5K (GAA→AAA) | trhP → | tRNA wobble base hydroxylation protein TrhP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,165,680 | 0 | G | A | 92.9% | 35.0 / NA | 14 | E5K (GAA→AAA) | trhP | tRNA wobble base hydroxylation protein TrhP |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/9); minor base C (1/0); total (5/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGCCACCGCGCAATCTCGTGAAACCGGAATTGCCTCCGTTAAAGCCAATGGCACAAGCCAGACGGTGAAAGACAATACGTAATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGGAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTCGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACC > NC_000913/2165439‑2165918 | aCGCCACCGCGCAATCTCGTGAAACCGGAATTGCTTCCGTTAAAGCCAATGGCACAAGCCAGACGGTGAAAGACAATACGTAATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTCCCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGGGGGGGCACTCCCCTAACCGCTTCATCAGGGGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAATCCGAAACTCCtt < 1:69307/250‑1 (MQ=255) gTGAAACCGGAATTGCTTCCGTTAAAGCCAATGGCACAAGCCAGACGGTGAAAGACAATACGTAATTACGATGCCGGGCGTGGGTTGTTGGCGACCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAACGTGGGGGCACTCCCCTCACCGCTTCATCAGGGGAAGCGGATCTGACCTGTCATCAGCACGAGAGAATTATGTTTAAACCGCAACTCCTTTCCCCGGCGGGAACGCTg > 1:161259/1‑250 (MQ=255) gAATTGCCTCCGTTAAAGACAATGGCACAAGCCAGACGGTGAAAGACAATACGTCATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTACCAGCGCCCCCCACAGCGCTACAATGCCCGCCCTTACAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAACCTCATTTCCCCGGCGGGAACGATGACAAATATGc > 1:33937/1‑251 (MQ=255) cAATGGCACAAGCCAGACGGTGAAAGACAATACGTAATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAATCTCCTTTCCCCGGCGGGAACGCTGAAAAAGATGCGTTACGCTTTCGCTTATgg < 1:70471/251‑1 (MQ=255) gCACAAGCCAGACGGTGAAAGACAATACGTAATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATGCCCGCCCGTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTTTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAg < 1:218924/251‑1 (MQ=255) gTAATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATTCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGACAGCCGCGTTa < 1:5950/251‑1 (MQ=255) gggTTGTTGGCGTCCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTGATGTCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGcaac < 1:66616/250‑1 (MQ=255) aCCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGaaaaa > 1:105960/1‑151 (MQ=255) gCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCTGATCGGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCcggcgg < 1:146591/132‑1 (MQ=255) gcgcTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATg < 1:60657/251‑1 (MQ=255) cTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCATGCGCTgggg > 1:117801/1‑251 (MQ=255) gCGGATCTGACCTGGCATCAGAACGAGAGAATTATGTGTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGATCGGCATCAATGAAGCCCACGAGCTGGGGAAAAAGTTTTATGTCGTGGTCAACATTGCACCGCACAACGc < 1:141595/251‑1 (MQ=255) ttATGTTTAAACCGAGACTCCTTTCCNCGGCGGNNACNCTGAAAAAAATGCGTTACGNTTNNNCNNNTNGCTCCNGTNNTGTTTAAACNGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACGCATTCAACCACGAAAANTTTCAGATCNNCAGCAATGAAGCCCACTCGCTNGGGNNANNGntttnggn > 2:48978/1‑189 (MQ=255) aTGTTTAAACCGAAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCTTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACTAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTCGTGGTCAACATTGCACCGCACAACTCCAACCTGaaagccgtgaatcgtgtcctgaaacc < 1:173100/251‑24 (MQ=255) | ACGCCACCGCGCAATCTCGTGAAACCGGAATTGCCTCCGTTAAAGCCAATGGCACAAGCCAGACGGTGAAAGACAATACGTAATTACGATGCCGGGCGTGGGTTGTTGGCGTCCGGCGCTTTACCAGAGCCCCCCACAGCGCTACAATGCCCGCCCTTAAAGTGGGGGCACTCCCCTAACCGCTTCATCAGGTGAAGCGGATCTGACCTGTCATCAGAACGAGAGAATTATGTTTAAACCGGAACTCCTTTCCCCGGCGGGAACGCTGAAAAATATGCGTTACGCTTTCGCTTATGGCGCAGATGCTGTTTATGCGGGCCAGCCGCGTTATTCCCTGCGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTCGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACC > NC_000913/2165439‑2165918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |