| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,669,397 | G→A | P122P (CCG→CCA) | hcaE → | putative 3‑phenylpropionate/cinnamate dioxygenase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,669,397 | 0 | G | A | 80.0% | 11.3 / ‑5.3 | 10 | P122P (CCG→CCA) | hcaE | putative 3‑phenylpropionate/cinnamate dioxygenase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/5); minor base C (1/1); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 | |||||||||||
CGCCCACGAAAGCCAGATCCCAAAACCCGGTGATTTCTTTAACACCTACATGGGAGAAGATGCGGTTGTCGTAGTGCGTCAGAAAGACGGCAGCATCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTATGCAGATTGCGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCTGGTCTTATGGCATTAACGGCGAGTTGATCGATGTACCGCTGGAACCTCGCGCCTACCCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACGAAGTTCCTTGTGTGGAGAGTTATAAAGGGCTAATTTTTGGCAACTGGGATACCAGCGCACCGGGCCTGCGTGATTACCTGGGTGACATTGCCTGGTATCTGGATGGCATGCTGGATCGTCGCGAAGGCGGCACCGAAATTGTCGGCGGCGTACAAAAGTGGGTGATCAAC > NC_000913/2669169‑2669622 | cGCCCACGAAAGCAAGATCACAAAACCCGGTGATTTCTTTAACACCTACATGGGAGAAGATGCGGTTGTCGTAGTGCGTCAGAAAGACGGCAGCATCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTATGCAGATTGCGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCTGGTCTTATGGCATTAACGGCGAGTTGATCGATGTACCACTGGAACCTCGCGCCTACCcac > 1:173020/1‑251 (MQ=255) aaCACCTACATGGGAGAAGATGCGGTTGTCGTAGTGCGTCAGAAAGACGGCAGCATCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTATGCAGATTGCGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCTGGTCTTATGGCATTAACGGCGAGTTGATCGATGTACCACTGGAACCTCGCGCCTACCCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACGAAGTTcc < 1:208667/251‑1 (MQ=255) tGCGGTTGTCGTAGTGCGGCAGAAAGACGGCAGCATCGCGGCGTTTCTCAAACACTGCAGCCCCCAGGCCATGCGTGTGAGTTTTTCAGATTGCGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCTGGTCTTATGGCATTAACGGCGAGTTGATCGCTGCACAACTCGAACCTCGCGCCTAACCACAAGGGTTGTATAAATCCCCATGGGGACAAAACGAAGTTCCTTGTGTGGAGAGTTATaa > 1:192739/1‑249 (MQ=255) gCGGTGGTTGTAGTGCGTCAGAAAGACGGCAGCATCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTAGGCAGATTGCGGCAACACTCGCTCCTTTACCTTCCCGTATCACGGCTGGTCTTATGGCATGAACGTCGAGTTGATCGAGGTACCACTGTAACCTCGCGCCTACCCACAAGGGTTGTGTTAATCCCAGTGGGGACTAAACGAAGTTCCTTGTGTGGAGAGTTATAAAg < 1:103787/250‑1 (MQ=255) gACGGCAGCATCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTATGCAGATTGAGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCTGGTCTTGTGGCATTAACGGCGAGTTACTCGCTGTACCCCTGGAACCTCGCGCCTACCCACAAGGGGTGTGTAAATCCCACTGGGGCCTAAACGAAGTTCCTTGTGTGGAGGGTTATAAAGGGCTAATTTTTGGCAACTGGGATAc > 1:32782/1‑251 (MQ=255) gcagcaTCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTATGCAGATTGCGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCGGGTCTTATGGCATTAACGGCGAGTTGATCGATGTACCACTGGAACCTCGCGCCTACCCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACGAAGTTCCTTGTGTGGAGAGTTATAAAGGGCTAATTGTTGGCAACTGGGATACCAgc < 1:165819/251‑1 (MQ=255) ccccgcCTTTACCTGCCCGTATCACGGCTGGTCTTATGGCATTAACGGCGAGTTGATCGATGTACCCCTGGAACCTCGCGCCTACCCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACGAAGTTCCTTGTGTGGAGAGTTATAAAGGGCTAATTTTTGGCAACTGGGATACCAGCGCACCGGGCCTGCGTGATTACCTGGGTGACATTGCCTGGTATCTGGATGGCATGCTGGAGCGTCGCGAAggcn < 1:173883/248‑2 (MQ=255) tAACGGCGAGTTGATCGATGTACCACTGGAACCTCGCGCCTACCCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACGAAGTTCCTTGTGTGGAGAGTTATAAAGGGCTAATTTTTGGCAACTGGGATACCAGCGCACCGGGCCTGCGTGATTACCTTTGTGACATTGCCTGGTATCTTGATGGCATGCTGGAACGTCTCGAAGGCGGCACCGAAATTGTCGGCGGCGTACAAAAGTGGGTGATCacc < 1:203671/250‑3 (MQ=255) aGNTGATCNATGTNCCACTGGAACCTCGCNCCTACCCACAAGGGTTGTCNNANCCCCANTgggg < 2:80302/64‑1 (MQ=255) gATCGATGTACCACTGGAACCTCGCGCCTAACCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACAAAGTTGCTTGTGTGGAGAGTTATAAAggg > 1:189226/1‑97 (MQ=255) | CGCCCACGAAAGCCAGATCCCAAAACCCGGTGATTTCTTTAACACCTACATGGGAGAAGATGCGGTTGTCGTAGTGCGTCAGAAAGACGGCAGCATCAAGGCGTTTCTCAACCAATGCCGCCACCGGGCCATGCGTGTGAGTTATGCAGATTGCGGCAACACTCGCGCCTTTACCTGCCCGTATCACGGCTGGTCTTATGGCATTAACGGCGAGTTGATCGATGTACCGCTGGAACCTCGCGCCTACCCACAAGGGTTGTGTAAATCCCACTGGGGACTAAACGAAGTTCCTTGTGTGGAGAGTTATAAAGGGCTAATTTTTGGCAACTGGGATACCAGCGCACCGGGCCTGCGTGATTACCTGGGTGACATTGCCTGGTATCTGGATGGCATGCTGGATCGTCGCGAAGGCGGCACCGAAATTGTCGGCGGCGTACAAAAGTGGGTGATCAAC > NC_000913/2669169‑2669622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |