| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,281,604 | C→T | L325L (CTG→TTG) | radD → | putative DNA repair helicase RadD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,281,604 | 0 | C | T | 90.9% | 20.7 / ‑5.4 | 11 | L325L (CTG→TTG) | radD | putative DNA repair helicase RadD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/7); minor base A (0/1); total (3/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATTATGGAGTTTGCTGCAACGCGCAAAGGGGTGATGATTTTTGCCGCGACGGTTGAACACGCAAAAGAGATTGTGGGATTACTGCCTGCCGAAGATGCAGCACTGATTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTTTAAAGCCCAGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTCTGCCCTGCCTGCGG > NC_000913/2281363‑2281794 | gATTATG‑AGTTTGCTGCAACGCGCAAAGGGGTGATGATTTTTGCCGCGACGGTTGAACACGCAAAAGAGATTGTGGGATTACTGCCTGCCGAAGATGCAGCACTGATTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTTTAAAGCCCAGCGTTTTCGCTATCTGGTCAACGGCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTAc < 1:114076/251‑1 (MQ=255) cGGTTGAACACGCAAAAGAGATTGTGGGATTACTGCCTGCCGAAGATGCAGCACTGATTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTTTAAAGCCCAGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTACCg > 1:68580/1‑204 (MQ=255) cGGTTGAACACGCAAAAGAGATTGTGGGATTACTGCCTGCCGAAGATGCAGCACTGATTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTTTAAAGCCCAGCGTTTTCGCGATCTGGTCAACGTCGCGGTACTGACCACCGGATGTGACGCCCCGCACGTCGATCTTATCGCCATTATGCGCGCTCCCGAATCAGTGAGTCTTTACCAACAAAGTGTCGGGCGCGGTCTGCGtctc < 1:187124/251‑1 (MQ=255) acGCAAAAGAGATGGTGGGATTACTGCCTGCCGAAGATGCAGCCCTGATTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAAGTGAAAATTTTAAAGCCCAGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCGTATCGCCAGTTTGCGAACTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGc < 1:70819/251‑1 (MQ=255) gATGCAGCCCTGAGTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAAGTTTAAAGCCCAGCGTTTTCGCTAGCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCAGTTTGCGCCCTa < 1:221480/157‑1 (MQ=255) gATTACTGNCNNNANNCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTTTAAAGCCCANCGTTTTCGCTATCTGNTCNACGTNGCGNTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTACCg > 2:147378/1‑149 (MQ=255) gATTACTGGCGACTCCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTGTAAAGCCCAGCGTATTCGCTATCGGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTACCg < 1:147378/149‑1 (MQ=255) tGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTACCGAATCAGTGAGTc < 1:11163/87‑1 (MQ=255) tGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTACCGAATCAGTGAGTc > 2:11163/1‑87 (MQ=255) gTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTTTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTCTGCCCTGCCTGCgg < 1:171558/251‑1 (MQ=255) cGTCGATCTTATCGCCATTTTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAAGTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATGCTGGATTATGCGGGTAATCCTCACGAACTCTACGCGCCTGAAGTTTGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTctgccc < 1:118812/201‑1 (MQ=255) | GATTATGGAGTTTGCTGCAACGCGCAAAGGGGTGATGATTTTTGCCGCGACGGTTGAACACGCAAAAGAGATTGTGGGATTACTGCCTGCCGAAGATGCAGCACTGATTACTGGCGACACCCCCGGCGCTGAGCGCGATGTGTTAATTGAAAATTTTAAAGCCCAGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTCTGCCCTGCCTGCGG > NC_000913/2281363‑2281794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |