| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,744,234 | G→A | Y99Y (TAC→TAT) | rplS ← | 50S ribosomal subunit protein L19 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,744,234 | 0 | G | A | 85.7% | 10.1 / NA | 7 | Y99Y (TAC→TAT) | rplS | 50S ribosomal subunit protein L19 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/3); minor base C (1/0); total (4/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGCCGCGTCGCAGTGGTGATTACTACCCCTTAAAACACCAGCAAACAGATAAAAAAGGGCCAGCCAATTGGCCAGCCCTTCTTAACAGGATGTCGCTTAAGCGAAATCTTAGTTAAGACGCTCTTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGGTAGTACAGTTTAGCTTTACGAACAGCACCACGACGTTTGACAGAAATGCTGTCAACTACCGGAGAGTGAGTCTGGAAGACACGCTCAACGCCTTCGCCGTTGGAAATTTTACGAACAGTGAATGCAGAGTGCAGACCGCGGTTACGAATAGCGATAACCACGCCCTCGAATGCCTGCAGACGTTTTTTGGAACCTTCAACAACCCATACTTTCACTTCCACGGTATC > NC_000913/2744074‑2744461 | ccgccgCGTCGCAGTGGTGATTACTACCCCTTAAAACACCAGCAAACAGATAAAAAAGGGCCAGCCAATTGGCCAGCCCTTCTTAACAGGATTTCGCTTAAGCGAAATCGTAGTTAAGACGCTCTGTGATACGAGCATCCTTACCAGTACGCTCACTGAGATAGTACAGTTTAGCTTTACGATCACGACCGCTACGTTTGACAGAAATGCTGTCAACTACCGGAGAGTGAGTCTGGAAGACACGCTCAACg < 1:207060/251‑1 (MQ=255) ttACTACCCCTTAAAACACCAGCAAACAGATAAAAAAGGGCCAGCCAATTGGCCAGCCCTTCTTAACAGGATGTCGCTTAAGCGAAATCTTAGTTAAGACGCTCTTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGATAGTACAGTTTAGCTTTACGAACAGCACCACGACGTGTGACAGAAATGCTGTCAAc < 1:180723/197‑1 (MQ=255) aGGATGTCGCTTAAGCGAAATCTTAGTTAAGACGCTCTTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGATAGTACAGTTTAGCTTTACGAACAGCACCACGACGTTTGACAGAAATGCTGTCAACTTCCGGAGAGTGAGTCTGGAAGACACGCTCAACGCCTTCGCCGTTGGAAATTGTACGAACAGTGAATGCAGAGTGCAGACCGCGGTTCCGAATAGCGATAACCACGCCCTCGAATGCCTGc < 1:64001/251‑1 (MQ=255) gATGTCGCTTAAGCGAAATCTTAGTTAAGACGCTCTTTGATACGAGCAGCCTTACACGTACGCTCACGCAGCTAGTACAGTTTAGCTTTACGAACAGCACCACGACGTTTGACAGAAATGCTGTCAACTACCGGAGAGTGAGTCTGGAAGACACGCTCAACGCCTTCGCCGTTGGAAATTTTACGAACAGTGAATGCAGAGTGCAGACCGCGGTTACGAATAGCGATAACCACGCCCTCGAATGCCTGc > 1:31163/1‑249 (MQ=255) gCGAAATCTTAGTTAAGACGCTCTTGGATACGAGCAGACTTACCAGTACGCTAACGCCGATAGTACAGTTTAGCTTTGAGAACAGCACCACGACGTTTGACAGAAATGCTGTCAACTACCGGAGAGTGAGTCTGGag > 1:179569/1‑136 (MQ=255) ctctTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGATAGTACAGTTTAGCTTTACGAACAGCACCAAGAAGTTTGACAGAAATGCTGTCAACTACCGGCGAGTGAGTCTGGAAGACACGCTCAACGAATTCGCCGTTGGAAATTTTACGAACAGTGAATGCAGAGTGCAGACCGCGGTTACGAATAGCGATAACCACGCCCTAGAATGCCTGCAGACGTTTTTTGGACCCTTCAACAACCCATACtt > 1:164305/1‑251 (MQ=255) ccTTACCAGTACGCTCACGCCGATAGTACAGTTTAGCTTTACGAACAGCACCACGACGTTTGACCGAAATGCTGTCAACTACCGGAGAGTGAGTCTGGAAGACACGCTCAACGCCTTCGCCGTTGGCAATTTTACGAACAGTGAATGCAGAGTGCAGACCGCGGTTACGAATAGCGATAACCACGCCCTCGAATGCCTGCAGCCGTTTTTTGGAACCTTCAACAACCCATACTTTCACTTCCACGGTATc > 1:51055/1‑250 (MQ=255) | CCGCCGCGTCGCAGTGGTGATTACTACCCCTTAAAACACCAGCAAACAGATAAAAAAGGGCCAGCCAATTGGCCAGCCCTTCTTAACAGGATGTCGCTTAAGCGAAATCTTAGTTAAGACGCTCTTTGATACGAGCAGCCTTACCAGTACGCTCACGCAGGTAGTACAGTTTAGCTTTACGAACAGCACCACGACGTTTGACAGAAATGCTGTCAACTACCGGAGAGTGAGTCTGGAAGACACGCTCAACGCCTTCGCCGTTGGAAATTTTACGAACAGTGAATGCAGAGTGCAGACCGCGGTTACGAATAGCGATAACCACGCCCTCGAATGCCTGCAGACGTTTTTTGGAACCTTCAACAACCCATACTTTCACTTCCACGGTATC > NC_000913/2744074‑2744461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |