mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 4,430 | C→T | L233L (CTG→TTG) | thrC → | threonine synthase |
| RA | 9,398 | G→A | W31* (TGG→TGA) | mog → | molybdopterin adenylyltransferase |
| RA | 15,213 | G→A | G349D (GGT→GAT) | dnaJ → | chaperone protein DnaJ |
| RA | 34,178 | G→A | intergenic (+140/‑122) | carB → / → caiF | carbamoyl‑phosphate synthetase large subunit/DNA‑binding transcriptional activator CaiF |
| JC JC | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| RA | 64,583 | G→A | P400S (CCT→TCT) | polB ← | DNA polymerase II |
| RA | 71,134 | G→A | G250S (GGT→AGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 218,926 | G→A | T223T (ACC→ACT) | trmO ← | tRNA m(6)t(6)A37 methyltransferase |
| RA | 221,705 | G→A | T314I (ACT→ATT) | metN ← | L‑methionine/D‑methionine ABC transporter ATP binding subunit |
| RA | 236,865 | G→A | intergenic (+67/‑66) | dnaQ → / → aspV | DNA polymerase III subunit epsilon/tRNA‑Asp |
| RA | 251,994 | G→A | intergenic (+41/‑11) | dinB → / → yafN | DNA polymerase IV/antitoxin YafN |
| RA | 253,653 | G→A | intergenic (+492/+606) | yafP → / ← pepD | putative N‑acetyltransferase YafP/peptidase D |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 260,826 | G→A | G147S (GGC→AGC) | proB → | glutamate 5‑kinase |
| RA | 275,244 | G→A | intergenic (‑163/‑81) | insH1 ← / → mmuP | IS5 family transposase and trans‑activator/S‑methyl‑L‑methionine transporter |
| RA | 275,932 | G→A | G203D (GGC→GAC) | mmuP → | S‑methyl‑L‑methionine transporter |
| RA | 276,792 | G→A | E26E (GAG→GAA) | mmuM → | homocysteine S‑methyltransferase |
| RA | 280,533 | G→A | S68F (TCC→TTC) | yagB ← | orphan antitoxin YagB |
| RA | 313,437 | G→A | intergenic (‑195/‑1854) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 323,418 | G→A | A361T (GCC→ACC) | ykgF → | putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain |
| RA | 329,921 | G→A | M153I (ATG→ATA) | betT → | choline:H(+) symporter |
| RA | 344,072 | G→A | intergenic (+139/‑104) | yahK → / → yahL | aldehyde reductase, NADPH‑dependent/uncharacterized protein YahL |
| RA | 372,780 | G→A | L222L (CTG→CTA) | mhpD → | 2‑hydroxypentadienoate hydratase |
| RA | 421,341 | C→T | P119L (CCG→CTG) | proY → | putative transporter ProY |
| RA | 426,395 | C→T | L87F (CTC→TTC) | tgt → | tRNA‑guanine transglycosylase |
| RA | 426,421 | C→T | V95V (GTC→GTT) | tgt → | tRNA‑guanine transglycosylase |
| RA | 434,976 | T→C | I110I (ATT→ATC) | ribE → | 6,7‑dimethyl‑8‑ribityllumazine synthase |
| RA | 475,034 | G→A | A43V (GCC→GTC) | tesB ← | acyl‑CoA thioesterase II |
| RA | 500,959 | G→A | D279N (GAT→AAT) | gsk → | inosine/guanosine kinase |
| RA | 531,873 | C→T | E117K (GAG→AAG) | allS ← | DNA‑binding transcriptional activator AllS |
| RA | 546,050 | C→T | G105D (GGC→GAC) | allD ← | ureidoglycolate dehydrogenase |
| RA | 551,779 | C→T | P272P (CCG→CCA) | purK ← | 5‑(carboxyamino)imidazole ribonucleotide synthase |
| RA | 555,049 | C→T | P147S (CCG→TCG) | cysS → | cysteine‑‑tRNA ligase |
| RA | 556,072 | C→T | G161E (GGG→GAG) | ybcI ← | PF04307 family inner membrane protein YbcI |
| RA | 556,203 | C→T | W117* (TGG→TGA) | ybcI ← | PF04307 family inner membrane protein YbcI |
| RA | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| JC JC | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| RA | 631,633 | G→A | W580* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| RA | 658,165 | C→T | intergenic (‑227/‑782) | crcB ← / → tatE | F(‑) channel protein/twin arginine protein translocation system ‑ TatE protein |
| RA | 661,919 | C→T | A120A (GCG→GCA) | lipB ← | lipoyl(octanoyl) transferase |
| RA | 987,152 | G→T | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 1,069,278 | C→T | V188M (GTG→ATG) | rutG ← | pyrimidine:H(+) symporter |
| JC JC | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,290,881 | C→T | L214F (CTT→TTT) | rssB → | regulator of RpoS |
| MC JC | 1,294,035 | Δ141 bp | [tdk] | [tdk] | |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,303,073 | Δ12 bp | coding (175‑186/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,353,758 | T→A | D254V (GAT→GTT) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,494,388 | Δ1 bp | coding (684/924 nt) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,517,508 | G→T | V40V (GTG→GTT) | ortT → | orphan toxin OrtT |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,667,887 | Δ1 bp | coding (678/1221 nt) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,744,751 | Δ1 bp | coding (1295/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| JC JC | 1,792,772 | IS2 (–) +5 bp | intergenic (‑41/+33) | nlpC ← / ← btuD | NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,978,243 | G→T | intergenic (‑46/+275) | flhD ← / ← insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| RA | 2,003,264 | C→T | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,032,423 | G→A | V219V (GTC→GTT) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| RA | 2,104,837 | G→A | A83V (GCC→GTC) | wbbJ ← | putative lipopolysaccharide biosynthesis O‑acetyl transferase WbbJ |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,229,894 | C→T | E164E (GAG→GAA) | dusC ← | tRNA‑dihydrouridine(16) synthase |
| RA | 2,242,121 | A→G | S283P (TCG→CCG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,267,824 | C→T | intergenic (+113/‑5) | yeiQ → / → yeiR | putative oxidoreductase YeiQ/zinc‑binding GTPase YeiR |
| JC JC | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| RA | 2,272,083 | C→T | S453F (TCC→TTC) | pdeN → | putative c‑di‑GMP phosphodiesterase PdeN |
| RA | 2,274,557 | A→G | T127A (ACG→GCG) | yejB → | putative oligopeptide ABC transporter membrane subunit YejB |
| RA | 2,286,238 | C→T | noncoding (28/77 nt) | proL → | tRNA‑Pro |
| RA | 2,286,793 | C→T | pseudogene (2122/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| JC JC | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| RA | 2,337,899 | G→A | L508L (CTG→TTG) | gyrA ← | DNA gyrase subunit A |
| RA | 2,343,289 | C→T | G294D (GGC→GAC) | yfaL ← | putative autotransporter adhesin YfaL |
| RA | 2,368,016 | C→T | P316S (CCA→TCA) | arnC → | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| RA | 2,369,820 | C→T | F594F (TTC→TTT) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| RA | 2,381,273 | C→T | V91M (GTG→ATG) | elaA ← | putative acetyltransferase ElaA |
| RA | 2,388,510 | C→T | intergenic (‑84/‑125) | yfbN ← / → yfbO | uncharacterized protein YfbN/uncharacterized protein YfbO |
| RA | 2,397,444 | G→A | Q908* (CAA→TAA) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| JC JC | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,436,027 | C→T | G208D (GGT→GAT) | usg ← | putative semialdehyde dehydrogenase Usg |
| RA | 2,445,454 | C→T | G36E (GGG→GAG) | yfcA ← | putative transporter YfcA |
| RA | 2,446,775 | C→T | A233A (GCG→GCA) | aroC ← | chorismate synthase |
| RA | 2,448,413 | C→T | V10I (GTA→ATA) | prmB ← | ribosomal protein L3 N(5)‑glutamine methyltransferase |
| RA | 2,453,265 | C→T | intergenic (‑929/+1818) | yfcS ← / ← yfcV | putative fimbrial chaperone YfcS/putative fimbrial protein YfcV |
| RA | 2,487,809 | C→T | L1146L (CTG→TTG) | evgS → | sensor histidine kinase EvgS |
| RA | 2,520,359 | A→C | L105R (CTG→CGG) | gltX ← | glutamate‑‑tRNA ligase |
| RA | 2,521,000 | C→T | noncoding (70/76 nt) | valU → | tRNA‑Val |
| RA | 2,522,135 | C→T | V115I (GTT→ATT) | xapR ← | DNA‑binding transcriptional activator XapR |
| RA | 2,551,843 | C→T | G99D (GGC→GAC) | ypeA ← | putative acetyltransferase YpeA |
| RA | 2,555,053 | C→T | A44T (GCT→ACT) | eutR ← | putative DNA‑binding transcriptional regulator EutR |
| RA | 2,555,270 | C→T | T153T (ACG→ACA) | eutK ← | putative structural protein, ethanolamine utilization microcompartment |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,589,006 | C→T | S471F (TCT→TTT) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,601,372 | C→T | P58S (CCT→TCT) | hyfA → | hydrogenase 4 component A |
| RA | 2,603,648 | C→T | L611F (CTT→TTT) | hyfB → | hydrogenase 4 component B |
| RA | 2,609,197 | C→T | F237F (TTC→TTT) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,636,644 | C→T | R238H (CGT→CAT) | der ← | 50S ribosomal subunit stability factor |
| RA | 2,660,164 | C→T | K42K (AAG→AAA) | iscU ← | scaffold protein for iron‑sulfur cluster assembly |
| JC JC | 2,666,074 | IS1 (+) +9 bp | coding (640‑648/1281 nt) | csiE → | stationary phase‑inducible protein CsiE |
| RA | 2,667,552 | C→T | V99M (GTG→ATG) | hcaT ← | putative 3‑phenylpropionate transporter |
| RA | 2,674,316 | C→T | D125N (GAT→AAT) | yphB ← | putative aldose 1‑epimerase YphB |
| RA | 2,675,265 | C→T | G166E (GGA→GAA) | yphC ← | putative zinc‑binding dehydrogenase YphC |
| RA | 2,686,052 | C→T | A73V (GCG→GTG) | hmp → | nitric oxide dioxygenase |
| RA | 2,699,001 | C→T | P81P (CCC→CCT) | yfhH → | putative DNA‑binding transcriptional regulator YfhH |
| RA | 2,701,959 | C→T | G171R (GGG→AGG) | recO ← | recombination mediator protein RecO |
| RA | 2,763,456 | G→A | L29L (CTG→TTG) | abpB ← | putative helicase YfjK |
| RA | 2,799,259 | C→T | F32F (TTC→TTT) | alaE → | L‑alanine exporter |
| RA | 2,830,641 | C→T | Q277* (CAA→TAA) | gutQ → | D‑arabinose 5‑phosphate isomerase GutQ |
| RA | 2,837,401 | C→T | V9I (GTC→ATC) | hypF ← | carbamoyl‑‑[HypE] ligase |
| RA | 2,858,185 | C→T | L365L (CTG→TTG) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,864,638 | C→T | P135S (CCA→TCA) | ygbM → | putative 2‑oxo‑tetronate isomerase YgbM |
| RA | 2,880,559 | C→T | A164T (GCA→ACA) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,892,943 | C→T | S96F (TCC→TTC) | ygcN → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 2,914,023 | C→T | Q326Q (CAG→CAA) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase |
| RA | 2,925,138 | G→A | A48V (GCC→GTC) | syd ← | SecY‑interacting protein |
| RA | 3,123,727 | C→T | G27R (GGA→AGA) | glcB ← | malate synthase G |
| RA | 3,222,234 | G→A | G257S (GGC→AGC) | ebgR → | DNA‑binding transcriptional repressor EbgR |
| RA | 3,228,994 | G→A | G36D (GGC→GAC) | ygjK → | glycoside hydrolase |
| RA | 3,257,869 | C→T | A48T (GCG→ACG) | cyuP ← | cysteine detoxification protein CyuP |
| RA | 3,268,970 | A→G | T186A (ACA→GCA) | yhaC → | uncharacterized protein YhaC |
| RA | 3,276,217 | C→T | R312R (CGC→CGT) | garD → | GarD |
| RA | 3,277,851 | C→T | intergenic (+50/+5) | yhaV → / ← agaR | ribosome‑dependent mRNA interferase toxin YhaV/DNA‑binding transcriptional repressor AgaR |
| RA | 3,325,701 | G→A | A412V (GCT→GTT) | ftsH ← | ATP‑dependent zinc metalloprotease FtsH |
| RA | 3,358,472 | G→A | G1250S (GGC→AGC) | gltB → | glutamate synthase subunit GltB |
| RA | 3,403,891 | G→A | M136I (ATG→ATA) | yhdH → | acrylyl‑CoA reductase |
| RA | 3,484,496 | G→A | A3T (GCC→ACC) | prkB → | putative phosphoribulokinase |
| RA | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| MC JC | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| JC JC | 3,737,137 | IS2 (+) +5 bp | coding (37‑41/825 nt) | bax ← | putative glycoside hydrolase Bax |
| RA | 3,832,198 | A→G | intergenic (+32/+21) | yicH → / ← yicI | AsmA family protein YicH/alpha‑D‑xyloside xylohydrolase |
| RA | 3,885,012 | C→T | P66L (CCT→CTT) | yidD → | membrane protein insertion efficiency factor |
| RA | 3,941,942 | C→T | noncoding (135/1542 nt) | rrsC → | 16S ribosomal RNA |
| RA | 3,941,982 | C→T | noncoding (175/1542 nt) | rrsC → | 16S ribosomal RNA |
| RA | 3,952,440 | C→T | T80T (ACC→ACT) | ilvM → | acetolactate synthase II subunit IlvM |
| RA | 3,954,014 | C→T | S179S (TCC→TCT) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,956,719 | C→T | F463F (TTC→TTT) | ilvA → | threonine deaminase |
| RA | 3,956,756 | C→T | L476L (CTG→TTG) | ilvA → | threonine deaminase |
| RA | 3,969,001 | C→T | S362S (AGC→AGT) | rfe → | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 3,979,472 | C→T | A291V (GCT→GTT) | wzyE → | enterobacterial common antigen polymerase |
| RA | 3,981,902 | C→T | S339F (TCT→TTT) | yifK → | putative transporter YifK |
| RA | 3,992,961 | C→T | N603N (AAC→AAT) | cyaA → | adenylate cyclase |
| RA | 4,013,020 | C→T | intergenic (‑204/‑33) | metR ← / → metE | DNA‑binding transcriptional dual regulator MetR/cobalamin‑independent homocysteine transmethylase |
| RA | 4,045,760 | C→T | K281K (AAG→AAA) | yihG ← | 1‑acylglycerol‑3‑phosphate O‑acyltransferase YihG |
| RA | 4,063,945 | C→T | W117* (TGG→TGA) | ompL ← | putative outer membrane porin L |
| RA | 4,070,052 | C→T | S117N (AGC→AAC) | yihR ← | putative sulfoquinovose mutarotase YihR |
| RA | 4,084,913 | C→T | A304T (GCC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,093,692 | C→T | G194D (GGC→GAC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,099,392 | C→T | T249T (ACC→ACT) | rhaR → | DNA‑binding transcriptional activator RhaR |
| RA | 4,108,716 | C→T | intergenic (+202/‑118) | pfkA → / → sbp | 6‑phosphofructokinase 1/sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp |
| JC JC | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,126,657 | C→T | A52T (GCC→ACC) | priA ← | primosomal protein N' |
| JC JC | 4,135,180 | IS2 (–) +5 bp | coding (1346‑1350/2181 nt) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,138,560 | C→T | G159D (GGC→GAC) | gldA ← | L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,146,389 | (T)6→7 | coding (132/879 nt) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| RA | 4,185,676 | C→T | S109S (TCC→TCT) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,267,582 | G→A | G157S (GGC→AGC) | tyrB → | tyrosine aminotransferase |
| RA | 4,287,391 | G→A | intergenic (‑20/‑220) | acs ← / → ytcB | acetyl‑CoA synthetase (AMP‑forming)/protein YtcB |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,314,691 | G→A | P138S (CCC→TCC) | phnP ← | 5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,326,289 | G→A | intergenic (‑548/+110) | yjdN ← / ← yjdM | PF06983 family protein YjdN/zinc ribbon domain‑containing protein YjdM |
| RA | 4,331,783 | G→A | A428T (GCG→ACG) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,359,027 | G→A | I335I (ATC→ATT) | cadB ← | lysine:cadaverine antiporter |
| RA | 4,404,993 | G→A | A103T (GCA→ACA) | purA → | adenylosuccinate synthetase |
| RA | 4,411,028 | C→T | T159I (ACC→ATC) | yjfJ → | PspA family protein YjfJ |
| RA | 4,438,289 | G→A | E195K (GAA→AAA) | ytfI → | protein YtfI |
| JC JC | 4,536,236 | IS5 (+) +4 bp | intergenic (‑2183/‑358) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,542,683 | Δ1 bp | intergenic (+50/‑432) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,581,278 | A→G | V62A (GTT→GCT) | hsdS ← | type I restriction enzyme EcoKI specificity subunit |
| RA | 4,589,116 | G→A | intergenic (‑37/+13) | yjiX ← / ← btsT | PF04328 family protein YjiX/pyruvate:H(+) symporter |
| RA | 4,618,148 | G→A | intergenic (+46/‑81) | deoC → / → deoA | deoxyribose‑phosphate aldolase/thymidine phosphorylase |
| RA | 4,623,009 | C→T | P414L (CCG→CTG) | yjjJ → | toxin YjjJ |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196350 | 1203479 | 7130 | 4 [2] | [2] 3 | [icd]–[ymfL] | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,[ymfL] |
| * | * | ÷ | NC_000913 | 1203721 | 1211421 | 7701 | 3 [1] | [2] 3 | [ymfL]–mcrA | [ymfL],ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978503 | 9–776 | 20 [0] | [0] 20 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423851–3424231 | 3424449–3424238 | 8–599 | 3 [2] | [2] 3 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 26 (0.940) | 24/490 | 0.3 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382183 | NA (NA) | noncoding (924/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382179 = | NA (NA) | 26 (0.950) | 22/486 | 0.3 | NA | noncoding (920/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 566774 | 36 (1.300) | 12 (0.440) | 6/486 | 1.9 | 30.9% | pseudogene (91/93 nt) | renD | protein RenD |
| ? | NC_000913 | 568036 = | 18 (0.660) | pseudogene (2/213 nt) | renD | protein RenD | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 20 (0.720) | 20/490 | 0.4 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 20 (0.720) | 19/490 | 0.5 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||