| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,445,454 | C→T | G36E (GGG→GAG) | yfcA ← | putative transporter YfcA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,445,454 | 0 | C | T | 94.7% | 49.8 / ‑6.0 | 19 | G36E (GGG→GAG) | yfcA | putative transporter YfcA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (13/5); total (13/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
GAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACCCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCTTTGCAGTTCTGCCCCGCAACCATCGCCTGATGGCGG > NC_000913/2445215‑2445700 | gAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGCATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGGGTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGACGGAAGGGAGAGTAACtccccgccaccg > 2:28131/1‑251 (MQ=255) cctaaaCGTTTTGCCCCAGCATTGCGCCGCTAATGGAACCGACAAAGGTAATGGCGATATTGAGTTTCTGATCTCTTAATCTACCCCCTTTGGGGCGAATAAAGTAGATATTAGCGGAAATAGATCCGCCGCAGGCTTGCAGTTTATTGTTTGCCAGCGCATTAGCGGGAGACACCCCCGCTGCCATCAA‑GGCCGGAAGGGTGAGTACCTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATg < 1:151472/247‑1 (MQ=255) gaccGTATTGCACCAGAGGTGCGCCCCTCATTGGGCCAACAAGGGTAAGGGGAATATTGAGTTTTTGATCGCTTAAACAACCCCCTTGGGGGCGAATAAAGAAGATAGTAGCGAAAAAAGGGCCGCGGCAGGCTTGCAGTTTATTGTTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATAAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGc < 2:250013/247‑1 (MQ=255) aTTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACaaa > 1:193078/1‑250 (MQ=255) gACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAAccc > 1:248340/1‑250 (MQ=255) tGATCGCTTAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCAtt > 1:199146/1‑249 (MQ=255) tAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGGGAGTAACTAACCGCAACCGGCAATCGAGTCGATAAATCCCGCAAGCATGGCGACAAAAAAGAGAACCCCCAGCAACAGCGGGGAAACAATAAACAGGATATTAAACGTTTCAATTAGATCACGTg > 2:52086/1‑251 (MQ=255) acaaccctcTTTGCGGCGAATAAAGGAGATTGGGGGGGAAATAGGGCCGCGGCAGGCTTGCAGTTTATTGGTGGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTc < 2:248340/243‑1 (MQ=255) cACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATcc > 1:4972/1‑249 (MQ=255) agCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACgg > 2:66393/1‑251 (MQ=255) gAAATAGACCCGCGGCAGGCTAGCAGTTTATTGGTTGACACCGCACTAGCGGGAGACATCCCCGCTGCCATCCA‑TGCCGGCATGGTGAGTAACTCACAGCCACCGGCAATCGAGTCGATAAATCCCGGCAGCCTGGCGAAAAAAAAGCGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAAATCACGCGCTCATCCAGAAGCGACAGGCAGGAAGGCGGCACCGGAGGc > 2:61093/1‑251 (MQ=255) cAGTTTATGGGTGGCCAGCGAATTGGCGGGCGAC‑TCCCCCGTGGCCTCAAATGCCGGAATGGTGAGTAACCCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTttgt < 2:83286/251‑1 (MQ=255) aTTGTTTGCCAGCGCATGAGCGGGAGACATCCCCGCGGCCATCAA‑TCCCGGAATGGTGATTAACTCCCCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTc < 2:9252/250‑1 (MQ=255) tGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGttt > 2:248933/1‑251 (MQ=255) gcATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCCATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTATGTTGTTCCCGGTTTTGGAGGt > 1:189477/1‑251 (MQ=255) gcacacccccGCTGCAATCAA‑TGCCGGAATGGTGAGTACCTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCAGTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCt < 2:227245/245‑1 (MQ=255) cTGCCATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCTTTGCAGTTCTg > 1:257521/1‑251 (MQ=255) ccATCAA‑TGCCGGAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAAAGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTATTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCTTTGCAGTTCTGccc > 2:22558/1‑251 (MQ=255) gAATGGTGAGTAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCTTTGCAGTTCTGCCCCGCAACCATCGc > 1:106440/1‑251 (MQ=255) tAACTCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCTTTGCAGTTCTGCCCCGCAACCATCGCCTGATGGCgg > 1:59691/1‑251 (MQ=255) | GAATGGGCAAAATCTGCCGTAAGACATCAGCCTGAACGTATTGCACCAGCAGTGCGCCGCTCATTGAGCCGACAAAGGTCATGGCGATATTGAGTTTCTGATCGCTTAAACTAACCACTTTGCGGCGAATAAAGTAGATAGTAGCGGAAATAGAGCCGCCGCAGGCTTGCAGTTTATTGGTTGCCAGCGCATTAGCGGGAGACATCCCCGCTGCCATCAA‑TGCCGGAATGGTGAGTAACCCACCGCCACCGGCAATCGAGTCGATAAATCCCGCCAGCATGGCGACAAAAAAGAGAACTCCCAGCAACAGCGGGGAAACCATAAACAGGCTATTAAACGTTTCCATTAGATCACGTGCTCATCCAGTAGCGCCTGGCAGGAAGGCGGCAACGGAGGCGGTGTCTTCTTCTCAGGCTTTGTTGTTCCCGGTTTTGGAGGTTCAAACCAGCTTTGCAGTTCTGCCCCGCAACCATCGCCTGATGGCGG > NC_000913/2445215‑2445700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |