| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,093,692 | C→T | G194D (GGC→GAC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,093,692 | 0 | C | T | 96.4% | 91.3 / NA | 28 | G194D (GGC→GAC) | rhaD | rhamnulose‑1‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (10/17); total (11/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTTACAGCGCCAGCGCACTGGCGAGTGGCGTAACGCCGAAACGCTTGCCGAGCGCTATCAACTCTTCACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCATGATCACCCGATCTTTGCCGTTGGTGGCTTTAATGCGCTCGCAGTGGGAAAGGAAGT > NC_000913/4093446‑4093911 | ccTTACAGCGCCAGCGCACTGGCGAGTGGCGTAACGCCGAAACGCTTGCCGAGCGCTATCAACTCTTCACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGa < 1:57345/250‑1 (MQ=255) cagcgcACTGGCGAGTGGCGTAACGCCGAAACGCTTGCCGAGCGCTATCAACTCTTCACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGc < 1:132592/251‑1 (MQ=255) gAGTGGCGTAACGCCGAAACGCTTGCCGAGCGCTATCAACTCTTCTCGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCCCCATcc < 2:79400/251‑1 (MQ=255) cGCCGAAACGCTTACCGAGCGCTATCAACTCTTCACGGCTGGTGGTCTGGTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGTCAAAATg < 2:180423/251‑1 (MQ=255) tGCCGAGCGCTATCAACTCTTCACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCGGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCAt < 2:199173/249‑1 (MQ=255) cGAGCGCTTTCAACTCTTCACTGTTTATGGTCTGTTTCATCCCGCCCATCGAATAAACCTTCACTAATTCTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGGTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCggg < 2:149887/251‑1 (MQ=255) cGAGCGCTATCAACTCTTCACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCggg > 1:227585/1‑251 (MQ=255) aGCGCTATCAACTCTTCACGGCTGATTGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGACGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGTCCCCAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGCCGCTTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGa > 2:62734/1‑250 (MQ=255) cACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCg > 2:203490/1‑251 (MQ=255) tCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTATCGATTAAACCGACGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTcc > 2:177297/1‑251 (MQ=255) cccATCGAATAAACCTTCACTAATACTTGTTCTGATTTTTCTCCTGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCCCAACTCCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCCCCATCCACGTCAAAATGCCAACGCCATCCGGTAATACCACCATACACTCGGTGCTGCCTTCCCACAGTTGGCGAg < 1:197496/250‑1 (MQ=255) aaTCGAATAAACCGTCACTAATACTTGTGCTTAGTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCCGTCCGCTGCAGAAGACGCCGTGGAAGTGCCACAACACCAGCGAATGTTTGTGCAGCTCTTGTGCGGTCGCCTGGTCTAGTTCGTCCGTGCCGGGCTCCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTTCCTGCACACAGGTGGCGAGTGa < 2:170217/250‑1 (MQ=255) cGAATAAACCTTCACTAAGACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACGGAAGGTTTCATCCAGCGGCGGTCCGCTGCCGAAGACGCGGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGTCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCACCCGGGAATACCACCAGACACTCGGTGCTGCCTTACCACAGTTGGCTAGTGAAGa < 2:8568/251‑1 (MQ=255) aaCCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCgg > 2:101239/1‑251 (MQ=255) cACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGt < 1:272941/251‑1 (MQ=255) aCTTGTGCTGATTTTTCTGCGGTGTCGAGTAACCCGAAGGTTTCATCCAGCGTCGGTCCGCGGCCGAAGACTCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTATTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACTGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCaa < 2:228375/250‑1 (MQ=255) gCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATa < 1:203490/251‑1 (MQ=255) aTTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTTGCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCTTCCACGGCAAAATGCCAACGCCATCCGGGAATGCCGCCAGACACTCGGTGCTGCCTCCCCACAGTTGGCGAGTGAATACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTtggt < 1:165674/251‑1 (MQ=255) cGANGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATTCCGCCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGgtggcgtgg < 2:256390/251‑1 (MQ=255) cGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGgtggcgtgg > 1:164768/1‑251 (MQ=255) ggTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGATGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGt > 1:113838/1‑251 (MQ=255) cATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCAt < 1:18418/250‑1 (MQ=255) ccAGCGTCGGACAGCTGCCGAAAACGCCGAGGGAGAGCCACAACACCAGCGAATGTTTTTGCATCTCGTATGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCAATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGGGTCGTTTTCAAGTACATAGGTGAGGGGGATCAGGGTGGTGGCGGGGCAGTGCATGATc > 2:53870/1‑251 (MQ=255) tgcagAAGACGCCGAGGACGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGGGCGGTCGCCTGGTCGATTGCGTCCGTGCCGGGCACCATCCACGGCCAAATGCCAACGCCATCCTGGACTAAAACCAGACACACGGTGCGGCCTTCCCACAGATGGCGAGTGAAGACCGCGGAGTCGTTTTCAAGCACATAGGTGAGGTGGCACAAGTTGGTGGCGTGGCAGTGCATGCTCACCTAGTCTTTGCCg > 2:219308/5‑251 (MQ=255) gggCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCATGATCACCCGATCTTTGCCGTTGGTGGCTTTAATGCGCt > 2:220544/1‑251 (MQ=255) gggCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCATGATCACCCGATCTTTGCCGTTGGTGGCTTTAATGCGCt < 1:97907/251‑1 (MQ=255) cacCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGCTTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCATGATCACCCGATCTTTGCCGTTGGTGGCTTTAATGCGCTCGCAGTggg > 2:120116/1‑251 (MQ=255) aggTTTTTGCATCTCTTGTGCGGTCGCCTGGTCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCATGATCACCCGATCTTTGCCGTTGGTGGCTTTAATGCGCTCGCAGTGGGAAAGGAAGt < 1:177297/249‑1 (MQ=255) | CCTTACAGCGCCAGCGCACTGGCGAGTGGCGTAACGCCGAAACGCTTGCCGAGCGCTATCAACTCTTCACGGCTGATGGTCTGTTTCATGCCGCCCATCGAATAAACCTTCACTAATACTTGTGCTGATTTTTCTGCGGTGTCGATTAAACCGAAGGTTTCATCCAGCGTCGGTCCGCTGCCGAAGACGCCGTGGAAGGGCCACAACACCAGCGAATGTTTTTGCATCTCTTGTGCGGTCGCCTGGCCGATTTCGTCCGTGCCGGGCACCATCCACGGCAAAATGCCAACGCCATCCGGGAATACCACCAGACACTCGGTGCTGCCTTCCCACAGTTGGCGAGTGAAGACCGCGGTGTCGTTTTCAAGTACATAGGTGAGGGCGATCAGGTTGGTGGCGTGGCAGTGCATGATCACCCGATCTTTGCCGTTGGTGGCTTTAATGCGCTCGCAGTGGGAAAGGAAGT > NC_000913/4093446‑4093911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |