mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 233 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,429,111 | 0 | A | C | 58.9% | 44.1 / 60.8 | 56 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,114 | 0 | C | T | 58.9% | 20.7 / 70.0 | 56 | I22I (ATC→ATT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,724 | 0 | G | A | 57.7% | ‑5.6 / 25.3 | 26 | F54F (TTC→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,160 | 0 | C | G | 57.4% | 44.4 / 82.4 | 61 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,597 | 0 | C | A | 57.1% | 0.7 / 46.5 | 35 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,699 | 0 | A | C | 57.1% | ‑1.8 / 31.3 | 28 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,164 | 0 | C | G | 56.7% | 34.0 / 78.7 | 60 | A39G (GCC→GGC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,126 | 0 | A | C | 55.9% | 32.3 / 69.8 | 59 | A26A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,128 | 0 | A | G | 55.9% | 29.3 / 66.3 | 59 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,385 | 0 | A | G | 55.9% | 8.7 / 37.7 | 34 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,578 | 0 | T | C | 55.9% | 0.2 / 40.5 | 34 | E103G (GAA→GGA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,661 | 0 | C | G | 55.9% | 5.1 / 55.1 | 35 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,811 | 0 | C | T | 55.6% | 1.2 / 45.2 | 36 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,171 | 0 | A | G | 55.6% | 24.5 / 75.7 | 63 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,285 | 0 | T | C | 55.2% | 2.7 / 31.9 | 30 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 580,302 | 0 | C | T | 55.0% | ‑1.6 / 54.7 | 40 | R48R (AGG→AGA) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 581,073 | 0 | G | A | 55.0% | 1.5 / 51.6 | 40 | G80G (GGG→GGA) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 1,251,272 | 0 | A | C | 54.5% | 4.2 / 12.0 | 11 | A69A (GCA→GCC) | dhaR | DNA‑binding transcriptional dual regulator DhaR |
| * | NC_000913 | 1,634,569 | 0 | A | T | 54.5% | 3.9 / 44.6 | 33 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,571 | 0 | C | T | 54.5% | 4.3 / 44.4 | 33 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |