| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,069,278 | C→T | V188M (GTG→ATG) | rutG ← | pyrimidine:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,069,278 | 0 | C | T | 96.2% | 80.9 / NA | 26 | V188M (GTG→ATG) | rutG | pyrimidine:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (13/12); total (13/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACGGTATAAACCAGCCCACAGGCGATAATCCCGCCCAGCGCAATGCTGATATTCG > NC_000913/1069044‑1069520 | gACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAAt > 2:238772/1‑250 (MQ=255) ccacaataaccACCGCCACTGGCGAAATCAGCATCATTGCCTGTACATTAAAGGCGGGAGTGAAAAAATGTGGCAGAACGAACCAGGCAGCAAGCCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCAATAAAACGTTGGGCATCACGCCATACAGCAGACAGGCTACAATTAATCATACGAGAAACAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCAtt < 2:200732/241‑1 (MQ=255) ccaGAACCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAA‑TCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCg < 2:229411/251‑1 (MQ=255) gAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGAAAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGcc > 1:277961/1‑251 (MQ=255) cACGGGCGCAATAAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTTACGAGAGTAAAATCGACTGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAAGCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTAt < 2:35117/251‑1 (MQ=255) aTTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTg < 1:189906/251‑1 (MQ=255) aTTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTg < 2:5827/251‑1 (MQ=255) ccGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCAt > 1:63803/1‑251 (MQ=255) ggCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAATTTCAGGCCAATCGCCATCaccaccc > 2:83237/1‑250 (MQ=255) ggCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCTAATCGCCATCACCACCg < 1:245766/251‑1 (MQ=255) aaaTCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCAt > 2:77467/1‑251 (MQ=255) ccTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGt > 1:203440/1‑251 (MQ=255) cTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGACGTTCAATCCAGCGCGt > 1:126524/1‑250 (MQ=255) ggccatcaCGCCATACAGCAGACAGGCGAAAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCCCCAGCCCAATACACAGCGCCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAATTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTtca < 2:277961/248‑1 (MQ=255) atcaCGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATcac > 1:44529/1‑251 (MQ=255) ccaCGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCCCCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACGCGTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCGCCCGTCACCGCCGGCGGCATCAGTCGTTCAATCCATCGCGTACCTATTGTCATcacc < 2:132731/250‑1 (MQ=255) aaTTAATCCTACGAGAATCAATACCCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCAGCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCAccc < 2:165130/172‑1 (MQ=255) aaTTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCAccc > 1:165130/1‑172 (MQ=255) aaTTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACg > 1:163301/1‑241 (MQ=255) aaTTAACCCTACGATAATCAATAACCGCGGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTGTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACg < 2:163301/241‑1 (MQ=255) aTCAATAACCGCTGGATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCCTTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCCCCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATCACGGTATAAACCTGCCCACCGGCGATAAt > 1:241679/1‑251 (MQ=255) ggATCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACGGTATAAACCAGCCCACAGGCGATAATCCCGCCCAgcgc > 1:78513/1‑250 (MQ=255) aTCATGCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCTTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACGGTATAAACCAGCCCACAGGCGATAATCCCGCCCAGCGCAAt < 2:203440/251‑1 (MQ=255) gCCACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACGGTATAAACCAGCCCACAGGCGATAATCCCGCCCAGCGCAATGCt < 1:77467/249‑1 (MQ=255) ccACGGGTAAACATCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACGGTATAAACCAGCCCACAGGCGATAATCCCGCCCAGCGCAATGCTGat < 1:70290/251‑1 (MQ=255) ggTAAACATCGCCACCCGCCCAATACACAGCACCGTCATTAACGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGGCGGTATAAACCAGCCCCCCGGCGATAATCCCGCCACGCGCAATGCTGATCTTCg > 2:277940/1‑251 (MQ=255) | GACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGCAGCATGGCTGACGAGAGTAAAATCGACGGCTTTTCCCAGCCCTAAAACGTTGGTCATCACGCCATACAGCAGACAGGCGACAATTAATCCTACGAGAATCAATAACCGCTGGATCATGCCACGGGTAAACACCGCCACCAGCCCAATACACAGCACCGTCATTACCGCCATCCAGCTATCAAAGGCCGAAGCCGATACACTTTTCACTGCGATAGGCGCTAAGTTCAGGCCAATCGCCATCACCACCGCACCCGTCACCACCGGCGGCATCAGTCGTTCAATCCAGCGCGTACCGATTTTCATCACCACCAGGCCAATGACGGTATAAACCAGCCCACAGGCGATAATCCCGCCCAGCGCAATGCTGATATTCG > NC_000913/1069044‑1069520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |