| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,276,217 | C→T | R312R (CGC→CGT) | garD → | GarD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,276,217 | 0 | C | T | 85.7% | 62.8 / ‑5.7 | 28 | R312R (CGC→CGT) | garD | GarD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (13/11); minor base G (2/2); total (15/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGTAGAAAGCGCCAGCATTGTCAGTTTGCAGGATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGCTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTAGAGAAGGCACTCGGCTCCATTGCTAAATCGGGTAAAAGCG > NC_000913/3275981‑3276461 | ccAGTAGAAAGCGCCAGCATTGTCAGTTTGCAGGATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGt < 1:257044/251‑1 (MQ=255) aGTAGCAAGCGCCAGCATTGTCAGTTTGCAGGATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGCGAGGTGGCAGCGATGCGTTTTCTGGTGTAACAGCAACACCGGCGGTTGGCTATGCGTCTGTTCGACTAGTGCGTTGCCGCGCCACgggtc > 2:19551/1‑248 (MQ=255) aGAAAGCGCCAGCATTGTCAGTTTGCAGGATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGt < 1:255704/251‑1 (MQ=255) gCATTGTCAGTTTGCAGGATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGt > 1:261549/1‑250 (MQ=255) gATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGACCGCCGAACGCCATCTACAAAAACTGAATCAACGGTAGCGAGAAACCTGCCCGGCTTAAGAACTGGCCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGCTGGCTATGCGCCTGATCTACTGGTGCGTTGTGGCGCAACGGTGATGTTTTTAGCAGTAAAGGAAGTGCGTGAcgc > 1:258134/1‑251 (MQ=255) tGAAAAGCATGTCGGTTTTCAGGGCATGGTCGAGGATATTTTGCAAATCGCCGAACGCCCTCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGCTGGCGATGCGTCTGGTCTACTGGTGTGGTGCGGCGCAACGGGGATGGTTTTAGAGGAAACGGAAGTGGGTggcnggg > 2:252943/1‑245 (MQ=255) aaaaGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATc > 1:109359/1‑251 (MQ=255) aaGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCa < 1:113590/251‑1 (MQ=255) tCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTCTGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATctgctg > 1:57442/1‑251 (MQ=255) ggTTTTCAGTCCATGGTTGAGGATATTTTACAGATGGCCGAAAGCCATCTACAACAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCATAGGTATGCAGTGCGGAGGCAGCGATGCGATCTCTGGTGTAACGGCAAACCCGGCGGTTAGCTAGGCGCCTGCAATACTGGTGAGTTGCGGAGAAAAGGTGATGTTTTCGGAAATAAATGCAGTGCGAGACGCGGACCATctgctgtc > 2:165747/1‑249 (MQ=255) tCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGGGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCGGCTggagg > 1:192090/1‑248 (MQ=255) tGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTAc > 1:70260/1‑251 (MQ=255) aaCGGCAGCGACAAGCCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCTGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCTCAACGGTGATGTTTTCATAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGATCGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGTTACGATAAc < 1:34191/251‑1 (MQ=255) cAGAACTGGTCGGTGGTATGCAGTGGTGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAaccgaccg < 2:148388/250‑1 (MQ=255) aCTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTAGGCGTCTGATCTACTGGAGCGTTTCGGCGCAACGGGGATATTTTACGAAGTAAAGAAAGTGAGGGACGCGATCCATCTGCTGTCACCACGCGCAGTGCACGCAGAGGTCGGCAAACGGCTGATGGAGGAGATGGAGGGGTACGAAAACTATCTCAATATGGGTAAAACCGCACGCAgcg > 2:187187/1‑251 (MQ=255) tGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTa > 1:255528/1‑122 (MQ=255) tGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTa < 2:255528/122‑1 (MQ=255) tGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGGTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACCGCTGCTGGAGGAGATGGAGTGGTACGATAACTATATCAATATGGGAAAAACGGAACGCAGCGcc > 1:264775/1‑251 (MQ=255) ggTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTAGGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGGAGTGCGTGACGCGGACCATCTGCTGACACCACGCGCAGTGAACGAAGAGGGCGGCAAACGGCTGCTGGAGGAGATGGGGTGGTACGATAACACTCTAAATATGGGAAAAACCGACCGCAGGGcc > 2:86346/1‑250 (MQ=255) ggaaagaaGTGCGGTGGCAGCGATGCGTTTGCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTTACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACTATAACTATCTCAATAGGGGAAAAACCGGCCGCAGCGCCAACCCtt < 1:230341/243‑1 (MQ=255) ggCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGaa < 2:192090/251‑1 (MQ=255) ggCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGaa < 2:70260/251‑1 (MQ=255) ggCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGa < 1:210715/250‑1 (MQ=255) aCCCGGCGTTTGGCTTTGCGTCTGATCTACTGGCGCGGTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGACCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCTGCAAACGGCTGCTGGAGGAGATTGAGTGCTACGATAACTATCTCAATATGAGAAAAACCGACCGCAGCGCCATCCCGTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTTGAGAAGGCa < 2:57442/251‑1 (MQ=255) aTNCGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTAGAGAAGGCACTCGGCTCCATTGc < 2:261549/250‑1 (MQ=255) cGTCTGATCTACTGGTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTAGAGAAGGCACTCGGCTCCATTGCTaa > 1:144616/1‑250 (MQ=255) tACTGGTGCGGTGCGGCGCAACGGTGATGTTTTCATAAGCAACGGAAGTGCGTGACTCGATCCATGTGCTGACACCAAGCACAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTAACTCAATATGGGAAAAACCGACCGCAGCGCTAACACTTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTAGAGAAGGCACTCGGCTCCATTGCAAAATCTGGTaa < 2:33928/250‑1 (MQ=255) ggTGCGTTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTAGAGAAGGCACTCGGCTCCATTGCTAAATCGGGTAAAAgcg > 2:201685/1‑251 (MQ=255) | CCAGTAGAAAGCGCCAGCATTGTCAGTTTGCAGGATGAAAAGCATGTCGGTTTTCAGTCCATGGTCGAGGATATTTTGCAGATCGCCGAACGCCATCTACAAAAACTGAATCAACGGCAGCGAGAAACCTGCCCGGCTTCAGAACTGGTCGTTGGTATGCAGTGCGGTGGCAGCGATGCGTTTTCTGGTGTAACGGCAAACCCGGCGGTTGGCTATGCGTCTGATCTACTGGTGCGCTGCGGCGCAACGGTGATGTTTTCAGAAGTAACGGAAGTGCGTGACGCGATCCATCTGCTGACACCACGCGCAGTGAACGAAGAGGTCGGCAAACGGCTGCTGGAGGAGATGGAGTGGTACGATAACTATCTCAATATGGGAAAAACCGACCGCAGCGCCAACCCTTCGCCGGGCAACAAGAAAGGCGGTCTGGCAAACGTGGTAGAGAAGGCACTCGGCTCCATTGCTAAATCGGGTAAAAGCG > NC_000913/3275981‑3276461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |