#=GENOME_DIFF	1.0
#=CREATED	12:49:56 19 Dec 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20241218run12/IH193_S2_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20241218run12/IH193_S2_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20241218run12/IH193_S2_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH193_S2_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH193_S2_L001_R2_001.fastq.gz
#=CONVERTED-BASES	140734348
#=CONVERTED-READS	571971
#=INPUT-BASES	140736152
#=INPUT-READS	572000
#=MAPPED-BASES	129204511
#=MAPPED-READS	527094
SNP	1	175	NC_000913	4430	T
SNP	2	176	NC_000913	9398	A
SNP	3	177	NC_000913	15213	A
SNP	4	178	NC_000913	34178	A
MOB	5	577,578	NC_000913	57276	IS2	1	5
SNP	6	179	NC_000913	64583	A
SNP	7	180	NC_000913	71134	A
SNP	8	181	NC_000913	218926	A
SNP	9	182	NC_000913	221705	A
SNP	10	183	NC_000913	236865	A
SNP	11	184	NC_000913	251994	A
SNP	12	185	NC_000913	253653	A
DEL	13	566,579	NC_000913	257908	776
SNP	14	186	NC_000913	260826	A
SNP	15	187	NC_000913	275244	A
SNP	16	188	NC_000913	275932	A
SNP	17	189	NC_000913	276792	A
SNP	18	190	NC_000913	280533	A
SNP	19	191	NC_000913	313437	A
SNP	20	192	NC_000913	323418	A
SNP	21	193	NC_000913	329921	A
SNP	22	194	NC_000913	344072	A
SNP	23	195	NC_000913	372780	A
SNP	24	196	NC_000913	421341	T
SNP	25	197	NC_000913	426395	T
SNP	26	198	NC_000913	426421	T
SNP	27	199	NC_000913	434976	C
SNP	28	200	NC_000913	475034	A
SNP	29	201	NC_000913	500959	A
SNP	30	202	NC_000913	531873	T
SNP	31	203	NC_000913	546050	T
SNP	32	204	NC_000913	551779	T
SNP	33	205	NC_000913	555049	T
SNP	34	206	NC_000913	556072	T
SNP	35	207	NC_000913	556203	T
SNP	36	208	NC_000913	557635	T
MOB	37	586,587	NC_000913	568449	IS2	-1	5
SNP	38	283	NC_000913	631633	A
SNP	39	284	NC_000913	658165	T
SNP	40	285	NC_000913	661919	T
SNP	41	286	NC_000913	987152	T
SNP	42	287	NC_000913	1069278	T
MOB	43	583,588	NC_000913	1105376	IS2	-1	5
SNP	44	288	NC_000913	1196220	T
SNP	45	289	NC_000913	1196232	T
SNP	46	290	NC_000913	1196245	C
SNP	47	291	NC_000913	1196247	G
SNP	48	293	NC_000913	1290881	T
DEL	49	569,589	NC_000913	1294035	141
DEL	50	570,590	NC_000913	1299499	1199
DEL	51	571,591	NC_000913	1303073	12
SNP	52	294	NC_000913	1337394	G
SNP	53	295	NC_000913	1353758	A
DEL	54	429	NC_000913	1494388	1
SNP	55	430	NC_000913	1517508	T
SNP	56	454	NC_000913	1652331	C
DEL	57	455	NC_000913	1667887	1
DEL	58	456	NC_000913	1744751	1
MOB	59	593,594	NC_000913	1792772	IS2	-1	5
SNP	60	457	NC_000913	1978243	T
SNP	61	458	NC_000913	2003264	T
SNP	62	459	NC_000913	2032423	A
SNP	63	460	NC_000913	2104837	A
DEL	64	461,462	NC_000913	2173363	2
SNP	65	463	NC_000913	2229894	T
SNP	66	464	NC_000913	2242121	G
SNP	67	465	NC_000913	2267824	T
MOB	68	599,600	NC_000913	2269876	IS5	1	4
SNP	69	466	NC_000913	2272083	T
SNP	70	467	NC_000913	2274557	G
SNP	71	468	NC_000913	2286238	T
SNP	72	469	NC_000913	2286793	T
MOB	73	598,603	NC_000913	2319850	IS2	1	5
SNP	74	470	NC_000913	2337899	A
SNP	75	471	NC_000913	2343289	T
SNP	76	472	NC_000913	2368016	T
SNP	77	473	NC_000913	2369820	T
SNP	78	474	NC_000913	2381273	T
SNP	79	475	NC_000913	2388510	T
SNP	80	476	NC_000913	2397444	A
MOB	81	595,596	NC_000913	2406780	IS1	-1	8
SNP	82	477	NC_000913	2436027	T
SNP	83	478	NC_000913	2445454	T
SNP	84	479	NC_000913	2446775	T
SNP	85	480	NC_000913	2448413	T
SNP	86	481	NC_000913	2453265	T
SNP	87	482	NC_000913	2487809	T
SNP	88	483	NC_000913	2520359	C
SNP	89	484	NC_000913	2521000	T
SNP	90	485	NC_000913	2522135	T
SNP	91	486	NC_000913	2551843	T
SNP	92	487	NC_000913	2555053	T
SNP	93	488	NC_000913	2555270	T
DEL	94	573,604	NC_000913	2558699	6790
SNP	95	489	NC_000913	2589006	T
SNP	96	490	NC_000913	2601372	T
SNP	97	491	NC_000913	2603648	T
SNP	98	492	NC_000913	2609197	T
SNP	99	493	NC_000913	2636644	T
SNP	100	494	NC_000913	2660164	T
MOB	101	580,581	NC_000913	2666074	IS1	1	9
SNP	102	495	NC_000913	2667552	T
SNP	103	496	NC_000913	2674316	T
SNP	104	497	NC_000913	2675265	T
SNP	105	498	NC_000913	2686052	T
SNP	106	499	NC_000913	2699001	T
SNP	107	500	NC_000913	2701959	T
SNP	108	501	NC_000913	2763456	A
SNP	109	502	NC_000913	2799259	T
SNP	110	503	NC_000913	2830641	T
SNP	111	504	NC_000913	2837401	T
SNP	112	505	NC_000913	2858185	T
SNP	113	506	NC_000913	2864638	T
SNP	114	507	NC_000913	2880559	T
SNP	115	508	NC_000913	2892943	T
SNP	116	509	NC_000913	2914023	T
SNP	117	510	NC_000913	2925138	A
SNP	118	511	NC_000913	3123727	T
SNP	119	512	NC_000913	3222234	A
SNP	120	513	NC_000913	3228994	A
SNP	121	514	NC_000913	3257869	T
SNP	122	515	NC_000913	3268970	G
SNP	123	516	NC_000913	3276217	T
SNP	124	517	NC_000913	3277851	T
SNP	125	518	NC_000913	3325701	A
SNP	126	519	NC_000913	3358472	A
SNP	127	520	NC_000913	3403891	A
SNP	128	521	NC_000913	3484496	A
SNP	129	522	NC_000913	3486205	A
INS	130	523	NC_000913	3560455	G
DEL	131	575,606	NC_000913	3682261	34
MOB	132	605,607	NC_000913	3737137	IS2	1	5
SNP	133	524	NC_000913	3832198	G
SNP	134	525	NC_000913	3885012	T
SNP	135	526	NC_000913	3941942	T
SNP	136	527	NC_000913	3941982	T
SNP	137	528	NC_000913	3952440	T
SNP	138	529	NC_000913	3954014	T
SNP	139	530	NC_000913	3956719	T
SNP	140	531	NC_000913	3956756	T
SNP	141	532	NC_000913	3969001	T
SNP	142	533	NC_000913	3979472	T
SNP	143	534	NC_000913	3981902	T
SNP	144	535	NC_000913	3992961	T
SNP	145	536	NC_000913	4013020	T
SNP	146	538	NC_000913	4045760	T
SNP	147	539	NC_000913	4063945	T
SNP	148	540	NC_000913	4070052	T
SNP	149	541	NC_000913	4084913	T
SNP	150	542	NC_000913	4093692	T
SNP	151	543	NC_000913	4099392	T
SNP	152	544	NC_000913	4108716	T
MOB	153	608,609	NC_000913	4123923	IS2	-1	5
SNP	154	545	NC_000913	4126657	T
MOB	155	610,611	NC_000913	4135180	IS2	-1	5
SNP	156	546	NC_000913	4138560	T
INS	157	547	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	158	548	NC_000913	4185676	T
SNP	159	549	NC_000913	4267582	A
SNP	160	550	NC_000913	4287391	A
INS	161	552,553	NC_000913	4296381	GC
SNP	162	554	NC_000913	4314691	A
SNP	163	555	NC_000913	4326289	A
SNP	164	556	NC_000913	4331783	A
SNP	165	557	NC_000913	4359027	A
SNP	166	558	NC_000913	4404993	A
SNP	167	559	NC_000913	4411028	T
SNP	168	560	NC_000913	4438289	A
MOB	169	601,602	NC_000913	4536236	IS5	1	4
DEL	170	561	NC_000913	4542683	1
SNP	171	562	NC_000913	4581278	G
SNP	172	563	NC_000913	4589116	A
SNP	173	564	NC_000913	4618148	A
SNP	174	565	NC_000913	4623009	T
RA	175	.	NC_000913	4430	0	C	T	consensus_score=103.1	frequency=1	major_base=T	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	176	.	NC_000913	9398	0	G	A	consensus_score=79.0	frequency=1	major_base=A	major_cov=15/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/8
RA	177	.	NC_000913	15213	0	G	A	bias_e_value=3851470	bias_p_value=0.829763	consensus_score=112.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.476553	major_base=A	major_cov=14/20	major_frequency=9.714e-01	minor_base=G	minor_cov=0/1	new_cov=14/20	polymorphism_frequency=9.714e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=0/1	total_cov=14/21
RA	178	.	NC_000913	34178	0	G	A	consensus_score=64.2	frequency=1	major_base=A	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	179	.	NC_000913	64583	0	G	A	consensus_score=115.2	frequency=1	major_base=A	major_cov=13/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/24
RA	180	.	NC_000913	71134	0	G	A	consensus_score=138.0	frequency=1	major_base=A	major_cov=18/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/23
RA	181	.	NC_000913	218926	0	G	A	consensus_score=123.5	frequency=1	major_base=A	major_cov=25/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/13
RA	182	.	NC_000913	221705	0	G	A	consensus_score=77.8	frequency=1	major_base=A	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	183	.	NC_000913	236865	0	G	A	consensus_score=52.7	frequency=1	major_base=A	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	184	.	NC_000913	251994	0	G	A	consensus_score=39.3	frequency=1	major_base=A	major_cov=4/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/9
RA	185	.	NC_000913	253653	0	G	A	consensus_score=104.0	frequency=1	major_base=A	major_cov=19/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/14
RA	186	.	NC_000913	260826	0	G	A	consensus_score=78.6	frequency=1	major_base=A	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	187	.	NC_000913	275244	0	G	A	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=11.0	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=2/5	major_frequency=8.750e-01	minor_base=C	minor_cov=1/0	new_cov=2/5	polymorphism_frequency=8.750e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=3/5
RA	188	.	NC_000913	275932	0	G	A	consensus_score=88.4	frequency=1	major_base=A	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	189	.	NC_000913	276792	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=107.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/15	major_frequency=9.688e-01	minor_base=C	minor_cov=1/0	new_cov=16/15	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/15
RA	190	.	NC_000913	280533	0	G	A	consensus_score=70.7	frequency=1	major_base=A	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	191	.	NC_000913	313437	0	G	A	consensus_score=108.1	frequency=1	major_base=A	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	192	.	NC_000913	323418	0	G	A	consensus_score=34.9	frequency=1	major_base=A	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	193	.	NC_000913	329921	0	G	A	consensus_score=99.4	frequency=1	major_base=A	major_cov=19/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/13
RA	194	.	NC_000913	344072	0	G	A	consensus_score=72.0	frequency=1	major_base=A	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	195	.	NC_000913	372780	0	G	A	consensus_score=113.6	frequency=1	major_base=A	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	196	.	NC_000913	421341	0	C	T	consensus_score=104.4	frequency=1	major_base=T	major_cov=20/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/11
RA	197	.	NC_000913	426395	0	C	T	consensus_score=114.0	frequency=1	major_base=T	major_cov=13/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/20
RA	198	.	NC_000913	426421	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=113.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/19	major_frequency=9.714e-01	minor_base=A	minor_cov=0/1	new_cov=15/19	polymorphism_frequency=9.714e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	199	.	NC_000913	434976	0	T	C	consensus_score=76.2	frequency=1	major_base=C	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	200	.	NC_000913	475034	0	G	A	consensus_score=36.5	frequency=1	major_base=A	major_cov=7/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/5
RA	201	.	NC_000913	500959	0	G	A	consensus_score=121.5	frequency=1	major_base=A	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	202	.	NC_000913	531873	0	C	T	consensus_score=62.1	frequency=1	major_base=T	major_cov=8/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/11
RA	203	.	NC_000913	546050	0	C	T	consensus_score=89.4	frequency=1	major_base=T	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	204	.	NC_000913	551779	0	C	T	bias_e_value=4641620	bias_p_value=0.999994	consensus_score=156.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99646	major_base=T	major_cov=25/22	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=25/22	polymorphism_frequency=9.792e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=1/0	total_cov=27/23
RA	205	.	NC_000913	555049	0	C	T	bias_e_value=4631620	bias_p_value=0.997838	consensus_score=176.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.934972	major_base=T	major_cov=35/18	major_frequency=9.636e-01	minor_base=C	minor_cov=2/0	new_cov=35/18	polymorphism_frequency=9.636e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=2/0	total_cov=37/18
RA	206	.	NC_000913	556072	0	C	T	consensus_score=65.0	frequency=1	major_base=T	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	207	.	NC_000913	556203	0	C	T	bias_e_value=4598890	bias_p_value=0.990787	consensus_score=63.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.867368	major_base=T	major_cov=9/13	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=9/13	polymorphism_frequency=9.565e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/1	total_cov=9/15
RA	208	.	NC_000913	557635	0	A	T	bias_e_value=4099730	bias_p_value=0.883248	consensus_score=96.8	fisher_strand_p_value=0.557508	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/17	major_frequency=9.032e-01	minor_base=A	minor_cov=2/1	new_cov=11/17	polymorphism_frequency=9.032e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=2/1	total_cov=13/18
RA	209	.	NC_000913	566173	0	C	G	bias_e_value=4413000	bias_p_value=0.950739	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.3	fisher_strand_p_value=0.713548	frequency=2.381e-01	ks_quality_p_value=0.985229	major_base=C	major_cov=20/12	major_frequency=7.619e-01	minor_base=G	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.381e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=20/12	total_cov=25/17
RA	210	.	NC_000913	566205	0	T	C	bias_e_value=2691870	bias_p_value=0.579939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.8	fisher_strand_p_value=0.265744	frequency=2.308e-01	ks_quality_p_value=0.89637	major_base=T	major_cov=20/10	major_frequency=7.692e-01	minor_base=C	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.308e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=20/10	total_cov=24/15
RA	211	.	NC_000913	566245	0	G	A	bias_e_value=1770180	bias_p_value=0.381369	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.4	fisher_strand_p_value=0.125598	frequency=2.500e-01	ks_quality_p_value=0.981652	major_base=G	major_cov=20/7	major_frequency=7.500e-01	minor_base=A	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.500e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=20/7	total_cov=24/12
RA	212	.	NC_000913	566277	0	C	T	bias_e_value=1106180	bias_p_value=0.238316	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.1	fisher_strand_p_value=0.121045	frequency=2.727e-01	ks_quality_p_value=0.523895	major_base=C	major_cov=18/6	major_frequency=7.273e-01	minor_base=T	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.727e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=18/6	total_cov=22/11
RA	213	.	NC_000913	566323	0	C	T	bias_e_value=4641560	bias_p_value=0.999981	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.7	fisher_strand_p_value=1	frequency=2.258e-01	ks_quality_p_value=0.993874	major_base=C	major_cov=14/10	major_frequency=7.742e-01	minor_base=T	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.258e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=14/10	total_cov=18/13
RA	214	.	NC_000913	566326	0	T	C	bias_e_value=4617340	bias_p_value=0.994763	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.2	fisher_strand_p_value=1	frequency=2.333e-01	ks_quality_p_value=0.899421	major_base=T	major_cov=13/10	major_frequency=7.667e-01	minor_base=C	minor_cov=4/3	new_cov=4/3	polymorphism_frequency=2.333e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=13/10	total_cov=17/13
RA	215	.	NC_000913	566435	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.8	fisher_strand_p_value=1	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=9/11	major_frequency=7.143e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.857e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=9/11	total_cov=12/16
RA	216	.	NC_000913	566444	0	T	C	bias_e_value=4175280	bias_p_value=0.899524	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.2	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.586646	major_base=T	major_cov=9/11	major_frequency=6.667e-01	minor_base=C	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=3.333e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=9/11	total_cov=13/17
RA	217	.	NC_000913	566451	0	T	C	bias_e_value=4451830	bias_p_value=0.959105	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.1	fisher_strand_p_value=1	frequency=3.000e-01	ks_quality_p_value=0.727996	major_base=T	major_cov=9/12	major_frequency=7.000e-01	minor_base=C	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=3.000e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=9/12	total_cov=13/17
RA	218	.	NC_000913	566463	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.4	fisher_strand_p_value=1	frequency=3.939e-01	ks_quality_p_value=1	major_base=T	major_cov=8/12	major_frequency=6.061e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.939e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=8/12	total_cov=14/19
RA	219	.	NC_000913	566468	0	C	T	bias_e_value=3810970	bias_p_value=0.821038	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.464973	frequency=3.636e-01	ks_quality_p_value=1	major_base=C	major_cov=7/14	major_frequency=6.364e-01	minor_base=T	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.636e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=7/14	total_cov=13/21
RA	220	.	NC_000913	566492	0	G	T	bias_e_value=3096760	bias_p_value=0.667168	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.5	fisher_strand_p_value=0.730448	frequency=3.514e-01	ks_quality_p_value=0.417549	major_base=G	major_cov=9/15	major_frequency=6.486e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.514e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=9/15	total_cov=15/22
RA	221	.	NC_000913	566493	0	G	A	bias_e_value=3974600	bias_p_value=0.85629	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.9	fisher_strand_p_value=0.730448	frequency=3.514e-01	ks_quality_p_value=0.704102	major_base=G	major_cov=9/15	major_frequency=6.486e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.514e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=9/15	total_cov=15/22
RA	222	.	NC_000913	566498	0	C	T	bias_e_value=4167570	bias_p_value=0.897863	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.8	fisher_strand_p_value=0.730448	frequency=3.514e-01	ks_quality_p_value=0.79889	major_base=C	major_cov=9/15	major_frequency=6.486e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.514e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=9/15	total_cov=15/22
RA	223	.	NC_000913	566510	0	G	C	bias_e_value=2204240	bias_p_value=0.474883	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.5	fisher_strand_p_value=0.742056	frequency=3.421e-01	ks_quality_p_value=0.231879	major_base=G	major_cov=10/15	major_frequency=6.579e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.421e-01	polymorphism_score=38.6	prediction=polymorphism	ref_cov=10/15	total_cov=16/22
RA	224	.	NC_000913	566513	0	C	T	bias_e_value=4120370	bias_p_value=0.887695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=0.742056	frequency=3.421e-01	ks_quality_p_value=0.761682	major_base=C	major_cov=10/15	major_frequency=6.579e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.421e-01	polymorphism_score=33.8	prediction=polymorphism	ref_cov=10/15	total_cov=16/22
RA	225	.	NC_000913	566519	0	T	C	bias_e_value=4035340	bias_p_value=0.869376	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.4	fisher_strand_p_value=0.742056	frequency=3.421e-01	ks_quality_p_value=0.72041	major_base=T	major_cov=10/15	major_frequency=6.579e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.421e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=10/15	total_cov=16/22
RA	226	.	NC_000913	566522	0	C	A	bias_e_value=4335310	bias_p_value=0.934001	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.8	fisher_strand_p_value=0.742056	frequency=3.421e-01	ks_quality_p_value=0.888646	major_base=C	major_cov=10/15	major_frequency=6.579e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.421e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=10/15	total_cov=16/22
RA	227	.	NC_000913	566528	0	A	G	bias_e_value=3140760	bias_p_value=0.676648	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.3	fisher_strand_p_value=0.742056	frequency=3.421e-01	ks_quality_p_value=0.421896	major_base=A	major_cov=10/15	major_frequency=6.579e-01	minor_base=G	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.421e-01	polymorphism_score=33.1	prediction=polymorphism	ref_cov=10/15	total_cov=16/22
RA	228	.	NC_000913	566530	1	.	T	bias_e_value=2657990	bias_p_value=0.57264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.6	fisher_strand_p_value=0.724859	frequency=3.158e-01	ks_quality_p_value=0.321654	major_base=.	major_cov=10/16	major_frequency=6.842e-01	minor_base=T	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.158e-01	polymorphism_score=57.4	prediction=polymorphism	ref_cov=10/16	total_cov=16/22
RA	229	.	NC_000913	566532	0	A	T	bias_e_value=2539810	bias_p_value=0.547179	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.1	fisher_strand_p_value=0.725821	frequency=3.243e-01	ks_quality_p_value=0.297741	major_base=A	major_cov=10/15	major_frequency=6.757e-01	minor_base=T	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.243e-01	polymorphism_score=33.2	prediction=polymorphism	ref_cov=10/15	total_cov=16/22
RA	230	.	NC_000913	566535	0	T	.	bias_e_value=4322280	bias_p_value=0.931194	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=0.729477	frequency=3.333e-01	ks_quality_p_value=0.894839	major_base=T	major_cov=10/14	major_frequency=6.667e-01	minor_base=.	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.333e-01	polymorphism_score=43.6	prediction=polymorphism	ref_cov=10/14	total_cov=16/21
RA	231	.	NC_000913	566536	0	G	A	bias_e_value=4612200	bias_p_value=0.993654	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.1	fisher_strand_p_value=1	frequency=3.514e-01	ks_quality_p_value=0.889481	major_base=G	major_cov=10/14	major_frequency=6.486e-01	minor_base=A	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.514e-01	polymorphism_score=30.1	prediction=polymorphism	ref_cov=10/14	total_cov=16/21
RA	232	.	NC_000913	566543	0	A	T	bias_e_value=606732	bias_p_value=0.130715	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.8	fisher_strand_p_value=0.739554	frequency=3.684e-01	ks_quality_p_value=0.0388472	major_base=A	major_cov=10/14	major_frequency=6.316e-01	minor_base=T	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=3.684e-01	polymorphism_score=44.8	prediction=polymorphism	ref_cov=10/14	total_cov=17/21
RA	233	.	NC_000913	566547	0	C	A	bias_e_value=4045460	bias_p_value=0.871557	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.5	fisher_strand_p_value=0.744722	frequency=3.784e-01	ks_quality_p_value=0.72253	major_base=C	major_cov=10/13	major_frequency=6.216e-01	minor_base=A	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=3.784e-01	polymorphism_score=34.0	prediction=polymorphism	ref_cov=10/13	total_cov=17/20
RA	234	.	NC_000913	566565	0	A	G	bias_e_value=3973360	bias_p_value=0.856024	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.4	fisher_strand_p_value=0.527909	frequency=4.359e-01	ks_quality_p_value=0.973483	major_base=A	major_cov=9/13	major_frequency=5.641e-01	minor_base=G	minor_cov=9/8	new_cov=9/8	polymorphism_frequency=4.359e-01	polymorphism_score=46.6	prediction=polymorphism	ref_cov=9/13	total_cov=18/21
RA	235	.	NC_000913	566570	0	A	C	bias_e_value=4609790	bias_p_value=0.993135	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.0	fisher_strand_p_value=1	frequency=4.048e-01	ks_quality_p_value=0.885133	major_base=A	major_cov=12/13	major_frequency=5.952e-01	minor_base=C	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=4.048e-01	polymorphism_score=41.1	prediction=polymorphism	ref_cov=12/13	total_cov=20/22
RA	236	.	NC_000913	566597	0	T	C	bias_e_value=2864990	bias_p_value=0.617234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.6	fisher_strand_p_value=0.779349	frequency=4.231e-01	ks_quality_p_value=0.340325	major_base=T	major_cov=14/16	major_frequency=5.769e-01	minor_base=C	minor_cov=12/10	new_cov=12/10	polymorphism_frequency=4.231e-01	polymorphism_score=63.0	prediction=polymorphism	ref_cov=14/16	total_cov=26/26
RA	237	.	NC_000913	566651	0	T	C	bias_e_value=4033350	bias_p_value=0.868947	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.5	fisher_strand_p_value=0.569405	frequency=3.519e-01	ks_quality_p_value=0.937646	major_base=T	major_cov=16/19	major_frequency=6.481e-01	minor_base=C	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=3.519e-01	polymorphism_score=52.0	prediction=polymorphism	ref_cov=16/19	total_cov=28/27
RA	238	.	NC_000913	566728	0	G	T	bias_e_value=1598380	bias_p_value=0.344357	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.8	fisher_strand_p_value=1	frequency=2.955e-01	ks_quality_p_value=0.106205	major_base=G	major_cov=16/15	major_frequency=7.045e-01	minor_base=T	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.955e-01	polymorphism_score=39.8	prediction=polymorphism	ref_cov=16/15	total_cov=23/21
RA	239	.	NC_000913	566740	0	A	G	bias_e_value=4559950	bias_p_value=0.982399	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.7	fisher_strand_p_value=1	frequency=3.023e-01	ks_quality_p_value=0.81834	major_base=A	major_cov=17/13	major_frequency=6.977e-01	minor_base=G	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=3.023e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=17/13	total_cov=24/20
RA	240	.	NC_000913	566742	0	A	C	bias_e_value=3853370	bias_p_value=0.830172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.4	fisher_strand_p_value=1	frequency=2.955e-01	ks_quality_p_value=0.477105	major_base=A	major_cov=17/14	major_frequency=7.045e-01	minor_base=C	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.955e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=17/14	total_cov=24/20
RA	241	.	NC_000913	566756	0	G	C	bias_e_value=4159270	bias_p_value=0.896075	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.0	fisher_strand_p_value=1	frequency=2.653e-01	ks_quality_p_value=0.580245	major_base=G	major_cov=20/16	major_frequency=7.347e-01	minor_base=C	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.653e-01	polymorphism_score=42.5	prediction=polymorphism	ref_cov=20/16	total_cov=27/22
RA	242	.	NC_000913	566770	0	C	A	bias_e_value=4187010	bias_p_value=0.902051	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.4	fisher_strand_p_value=1	frequency=2.553e-01	ks_quality_p_value=0.591421	major_base=C	major_cov=19/16	major_frequency=7.447e-01	minor_base=A	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.553e-01	polymorphism_score=27.3	prediction=polymorphism	ref_cov=19/16	total_cov=25/22
RA	243	.	NC_000913	568052	0	T	C	bias_e_value=3307830	bias_p_value=0.71264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.700038	frequency=3.929e-01	ks_quality_p_value=0.493484	major_base=T	major_cov=10/7	major_frequency=6.071e-01	minor_base=C	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=3.929e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=10/7	total_cov=15/14
RA	244	.	NC_000913	578331	0	G	T	bias_e_value=1525030	bias_p_value=0.328552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.2	fisher_strand_p_value=0.277846	frequency=2.632e-01	ks_quality_p_value=0.357249	major_base=G	major_cov=15/13	major_frequency=7.368e-01	minor_base=T	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.632e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=15/13	total_cov=18/20
RA	245	.	NC_000913	578427	0	G	C	bias_e_value=3239120	bias_p_value=0.697839	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.7	fisher_strand_p_value=0.715175	frequency=2.750e-01	ks_quality_p_value=0.463928	major_base=G	major_cov=11/18	major_frequency=7.250e-01	minor_base=C	minor_cov=3/8	new_cov=3/8	polymorphism_frequency=2.750e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=11/18	total_cov=14/26
RA	246	.	NC_000913	578571	0	C	T	bias_e_value=4603980	bias_p_value=0.991884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.1	fisher_strand_p_value=1	frequency=2.812e-01	ks_quality_p_value=0.875332	major_base=C	major_cov=7/16	major_frequency=7.188e-01	minor_base=T	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.812e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=7/16	total_cov=10/23
RA	247	.	NC_000913	578574	0	A	C	bias_e_value=3616180	bias_p_value=0.779072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.4	fisher_strand_p_value=0.429976	frequency=3.030e-01	ks_quality_p_value=0.962766	major_base=A	major_cov=9/14	major_frequency=6.970e-01	minor_base=C	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=3.030e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=9/14	total_cov=11/23
RA	248	.	NC_000913	578605	0	T	G	bias_e_value=3267670	bias_p_value=0.703988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.1	fisher_strand_p_value=1	frequency=3.214e-01	ks_quality_p_value=0.337407	major_base=T	major_cov=6/13	major_frequency=6.786e-01	minor_base=G	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=3.214e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=6/13	total_cov=8/20
RA	249	.	NC_000913	578729	0	A	G	bias_e_value=4347400	bias_p_value=0.936605	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.3	fisher_strand_p_value=0.680172	frequency=4.167e-01	ks_quality_p_value=0.978799	major_base=A	major_cov=6/8	major_frequency=5.833e-01	minor_base=G	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=4.167e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=6/8	total_cov=13/12
RA	250	.	NC_000913	578809	0	T	C	bias_e_value=3100520	bias_p_value=0.667978	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.7	fisher_strand_p_value=0.483652	frequency=4.333e-01	ks_quality_p_value=0.632027	major_base=T	major_cov=8/9	major_frequency=5.667e-01	minor_base=C	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.333e-01	polymorphism_score=33.1	prediction=polymorphism	ref_cov=8/9	total_cov=16/15
RA	251	.	NC_000913	578811	0	T	G	bias_e_value=3446740	bias_p_value=0.742568	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.8	fisher_strand_p_value=0.472548	frequency=4.194e-01	ks_quality_p_value=0.793048	major_base=T	major_cov=8/10	major_frequency=5.806e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=4.194e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=8/10	total_cov=16/15
RA	252	.	NC_000913	578831	0	T	C	bias_e_value=341157	bias_p_value=0.073499	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.2	fisher_strand_p_value=0.29066	frequency=3.750e-01	ks_quality_p_value=0.0479546	major_base=T	major_cov=9/11	major_frequency=6.250e-01	minor_base=C	minor_cov=8/4	new_cov=8/4	polymorphism_frequency=3.750e-01	polymorphism_score=33.6	prediction=polymorphism	ref_cov=9/11	total_cov=17/15
RA	253	.	NC_000913	579004	0	C	T	bias_e_value=1838860	bias_p_value=0.396164	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.4	fisher_strand_p_value=0.466657	frequency=4.483e-01	ks_quality_p_value=0.279561	major_base=C	major_cov=6/10	major_frequency=5.517e-01	minor_base=T	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=4.483e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=6/10	total_cov=13/16
RA	254	.	NC_000913	579099	0	A	.	bias_e_value=1305220	bias_p_value=0.281198	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.1	fisher_strand_p_value=0.384211	frequency=4.091e-01	ks_quality_p_value=0.207334	major_base=A	major_cov=4/9	major_frequency=5.909e-01	minor_base=.	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=4.091e-01	polymorphism_score=33.8	prediction=polymorphism	ref_cov=4/9	total_cov=9/13
RA	255	.	NC_000913	579127	0	T	C	bias_e_value=2473980	bias_p_value=0.532996	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.3	fisher_strand_p_value=0.221295	frequency=4.348e-01	ks_quality_p_value=0.935298	major_base=T	major_cov=3/10	major_frequency=5.652e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=4.348e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=3/10	total_cov=8/16
RA	256	.	NC_000913	579134	0	T	C	bias_e_value=1730800	bias_p_value=0.372885	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.203796	frequency=4.167e-01	ks_quality_p_value=0.585251	major_base=T	major_cov=3/11	major_frequency=5.833e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=4.167e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=3/11	total_cov=8/16
RA	257	.	NC_000913	579146	0	A	G	bias_e_value=1893330	bias_p_value=0.407899	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.7	fisher_strand_p_value=0.203796	frequency=4.167e-01	ks_quality_p_value=0.668726	major_base=A	major_cov=3/11	major_frequency=5.833e-01	minor_base=G	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=4.167e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=3/11	total_cov=8/16
RA	258	.	NC_000913	579271	0	G	A	bias_e_value=3434980	bias_p_value=0.740034	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.2	fisher_strand_p_value=0.695966	frequency=4.444e-01	ks_quality_p_value=0.534766	major_base=G	major_cov=8/7	major_frequency=5.556e-01	minor_base=A	minor_cov=8/4	new_cov=8/4	polymorphism_frequency=4.444e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=8/7	total_cov=16/12
RA	259	.	NC_000913	579285	0	T	C	bias_e_value=655920	bias_p_value=0.141312	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.7	fisher_strand_p_value=1	frequency=5.517e-01	ks_quality_p_value=0.0317583	major_base=C	major_cov=10/6	major_frequency=5.517e-01	minor_base=T	minor_cov=8/5	new_cov=10/6	polymorphism_frequency=5.517e-01	polymorphism_score=31.9	prediction=polymorphism	ref_cov=8/5	total_cov=18/12
RA	260	.	NC_000913	579385	0	A	G	bias_e_value=2384590	bias_p_value=0.513737	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.7	fisher_strand_p_value=1	frequency=5.588e-01	ks_quality_p_value=0.194976	major_base=G	major_cov=12/7	major_frequency=5.588e-01	minor_base=A	minor_cov=9/6	new_cov=12/7	polymorphism_frequency=5.588e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=9/6	total_cov=21/13
RA	261	.	NC_000913	579457	0	A	G	bias_e_value=4458980	bias_p_value=0.960644	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.6	fisher_strand_p_value=1	frequency=5.161e-01	ks_quality_p_value=0.732895	major_base=G	major_cov=10/6	major_frequency=5.161e-01	minor_base=A	minor_cov=10/5	new_cov=10/6	polymorphism_frequency=5.161e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=10/5	total_cov=20/11
RA	262	.	NC_000913	579502	0	A	G	bias_e_value=2365170	bias_p_value=0.509554	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.6	fisher_strand_p_value=1	frequency=5.312e-01	ks_quality_p_value=0.192427	major_base=G	major_cov=9/8	major_frequency=5.312e-01	minor_base=A	minor_cov=8/7	new_cov=9/8	polymorphism_frequency=5.312e-01	polymorphism_score=39.2	prediction=polymorphism	ref_cov=8/7	total_cov=17/15
RA	263	.	NC_000913	579540	0	T	C	bias_e_value=4626110	bias_p_value=0.996652	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.3	fisher_strand_p_value=1	frequency=3.939e-01	ks_quality_p_value=0.919294	major_base=T	major_cov=12/8	major_frequency=6.061e-01	minor_base=C	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.939e-01	polymorphism_score=35.2	prediction=polymorphism	ref_cov=12/8	total_cov=20/14
RA	264	.	NC_000913	579651	0	C	T	bias_e_value=2064330	bias_p_value=0.444741	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.315075	frequency=4.118e-01	ks_quality_p_value=0.493258	major_base=C	major_cov=11/9	major_frequency=5.882e-01	minor_base=T	minor_cov=5/9	new_cov=5/9	polymorphism_frequency=4.118e-01	polymorphism_score=36.1	prediction=polymorphism	ref_cov=11/9	total_cov=16/18
RA	265	.	NC_000913	579671	0	T	C	bias_e_value=2970310	bias_p_value=0.639926	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.0	fisher_strand_p_value=0.282757	frequency=4.333e-01	ks_quality_p_value=1	major_base=T	major_cov=9/8	major_frequency=5.667e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=4.333e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=9/8	total_cov=13/17
RA	266	.	NC_000913	579717	0	A	C	bias_e_value=2274300	bias_p_value=0.489976	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.6	fisher_strand_p_value=0.274942	frequency=4.194e-01	ks_quality_p_value=0.657471	major_base=A	major_cov=10/8	major_frequency=5.806e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=4.194e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=10/8	total_cov=14/17
RA	267	.	NC_000913	579811	0	C	T	bias_e_value=4619930	bias_p_value=0.995321	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=1	frequency=5.556e-01	ks_quality_p_value=0.904837	major_base=T	major_cov=9/11	major_frequency=5.556e-01	minor_base=C	minor_cov=7/9	new_cov=9/11	polymorphism_frequency=5.556e-01	polymorphism_score=45.2	prediction=polymorphism	ref_cov=7/9	total_cov=16/20
RA	268	.	NC_000913	580020	0	G	A	bias_e_value=400371	bias_p_value=0.0862561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.2	fisher_strand_p_value=1	frequency=3.871e-01	ks_quality_p_value=0.0169973	major_base=G	major_cov=11/8	major_frequency=6.129e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=3.871e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=11/8	total_cov=18/13
RA	269	.	NC_000913	580115	0	C	T	bias_e_value=3511280	bias_p_value=0.756472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.6	fisher_strand_p_value=0.488676	frequency=3.611e-01	ks_quality_p_value=0.796434	major_base=C	major_cov=10/13	major_frequency=6.389e-01	minor_base=T	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.611e-01	polymorphism_score=32.2	prediction=polymorphism	ref_cov=10/13	total_cov=18/18
RA	270	.	NC_000913	580119	0	A	G	bias_e_value=2771250	bias_p_value=0.597039	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.1	fisher_strand_p_value=0.488676	frequency=3.611e-01	ks_quality_p_value=0.512274	major_base=A	major_cov=10/13	major_frequency=6.389e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.611e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=10/13	total_cov=18/18
RA	271	.	NC_000913	580120	0	C	T	bias_e_value=2624930	bias_p_value=0.565515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.7	fisher_strand_p_value=0.488676	frequency=3.611e-01	ks_quality_p_value=0.467173	major_base=C	major_cov=10/13	major_frequency=6.389e-01	minor_base=T	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.611e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=10/13	total_cov=18/18
RA	272	.	NC_000913	580302	0	C	T	bias_e_value=3528030	bias_p_value=0.76008	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.6	fisher_strand_p_value=1	frequency=5.500e-01	ks_quality_p_value=0.393042	major_base=T	major_cov=13/9	major_frequency=5.500e-01	minor_base=C	minor_cov=10/8	new_cov=13/9	polymorphism_frequency=5.500e-01	polymorphism_score=54.7	prediction=polymorphism	ref_cov=10/8	total_cov=23/17
RA	273	.	NC_000913	580437	0	A	C	bias_e_value=4641010	bias_p_value=0.999861	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.7	fisher_strand_p_value=1	frequency=4.231e-01	ks_quality_p_value=0.983357	major_base=A	major_cov=10/5	major_frequency=5.769e-01	minor_base=C	minor_cov=8/3	new_cov=8/3	polymorphism_frequency=4.231e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=10/5	total_cov=18/8
RA	274	.	NC_000913	580830	0	T	A	bias_e_value=3961640	bias_p_value=0.853498	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.1	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.510137	major_base=T	major_cov=14/12	major_frequency=6.500e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=33.7	prediction=polymorphism	ref_cov=14/12	total_cov=22/18
RA	275	.	NC_000913	580831	0	G	A	bias_e_value=4343090	bias_p_value=0.935677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.7	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.66348	major_base=G	major_cov=15/11	major_frequency=6.667e-01	minor_base=A	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=3.333e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=15/11	total_cov=22/18
RA	276	.	NC_000913	581042	0	T	G	bias_e_value=1773630	bias_p_value=0.382113	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.8	fisher_strand_p_value=0.20395	frequency=5.238e-01	ks_quality_p_value=0.606268	major_base=G	major_cov=16/6	major_frequency=5.238e-01	minor_base=T	minor_cov=10/10	new_cov=16/6	polymorphism_frequency=5.238e-01	polymorphism_score=53.6	prediction=polymorphism	ref_cov=10/10	total_cov=26/17
RA	277	.	NC_000913	581056	0	A	G	bias_e_value=795907	bias_p_value=0.171471	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=0.11974	frequency=5.366e-01	ks_quality_p_value=0.341126	major_base=G	major_cov=16/6	major_frequency=5.366e-01	minor_base=A	minor_cov=9/10	new_cov=16/6	polymorphism_frequency=5.366e-01	polymorphism_score=49.7	prediction=polymorphism	ref_cov=9/10	total_cov=25/16
RA	278	.	NC_000913	581073	0	G	A	bias_e_value=1257620	bias_p_value=0.270943	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.5	fisher_strand_p_value=0.106431	frequency=5.500e-01	ks_quality_p_value=0.710764	major_base=A	major_cov=16/6	major_frequency=5.500e-01	minor_base=G	minor_cov=8/10	new_cov=16/6	polymorphism_frequency=5.500e-01	polymorphism_score=51.6	prediction=polymorphism	ref_cov=8/10	total_cov=24/16
RA	279	.	NC_000913	581118	0	T	C	bias_e_value=1902530	bias_p_value=0.409881	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.5	fisher_strand_p_value=0.233684	frequency=4.400e-01	ks_quality_p_value=0.587459	major_base=T	major_cov=8/6	major_frequency=5.600e-01	minor_base=C	minor_cov=9/2	new_cov=9/2	polymorphism_frequency=4.400e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=8/6	total_cov=17/8
RA	280	.	NC_000913	581127	0	G	A	bias_e_value=2932040	bias_p_value=0.63168	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.6	fisher_strand_p_value=0.422533	frequency=4.583e-01	ks_quality_p_value=0.653884	major_base=G	major_cov=7/6	major_frequency=5.417e-01	minor_base=A	minor_cov=8/3	new_cov=8/3	polymorphism_frequency=4.583e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=7/6	total_cov=15/9
RA	281	.	NC_000913	581133	0	A	G	bias_e_value=2576250	bias_p_value=0.555028	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	fisher_strand_p_value=0.400323	frequency=4.783e-01	ks_quality_p_value=0.55273	major_base=A	major_cov=6/6	major_frequency=5.217e-01	minor_base=G	minor_cov=8/3	new_cov=8/3	polymorphism_frequency=4.783e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=6/6	total_cov=14/9
RA	282	.	NC_000913	581227	0	A	C	bias_e_value=2464800	bias_p_value=0.531018	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.2	fisher_strand_p_value=0.691355	frequency=4.545e-01	ks_quality_p_value=0.297565	major_base=A	major_cov=6/6	major_frequency=5.455e-01	minor_base=C	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=4.545e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=6/6	total_cov=10/13
RA	283	.	NC_000913	631633	0	G	A	consensus_score=84.9	frequency=1	major_base=A	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	284	.	NC_000913	658165	0	C	T	consensus_score=82.9	frequency=1	major_base=T	major_cov=13/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/12
RA	285	.	NC_000913	661919	0	C	T	consensus_score=65.2	frequency=1	major_base=T	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	286	.	NC_000913	987152	0	G	T	consensus_score=53.7	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	287	.	NC_000913	1069278	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=80.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/12	major_frequency=9.615e-01	minor_base=C	minor_cov=0/1	new_cov=13/12	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/13
RA	288	.	NC_000913	1196220	0	C	T	bias_e_value=4603880	bias_p_value=0.991863	consensus_score=13.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.875173	major_base=T	major_cov=4/6	major_frequency=8.333e-01	minor_base=C	minor_cov=1/1	new_cov=4/6	polymorphism_frequency=8.333e-01	polymorphism_score=0.4	prediction=consensus	ref_cov=1/1	total_cov=5/7
RA	289	.	NC_000913	1196232	0	C	T	bias_e_value=4639130	bias_p_value=0.999457	consensus_score=13.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967216	major_base=T	major_cov=4/6	major_frequency=8.333e-01	minor_base=C	minor_cov=1/1	new_cov=4/6	polymorphism_frequency=8.333e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/1	total_cov=5/7
RA	290	.	NC_000913	1196245	0	T	C	bias_e_value=4603880	bias_p_value=0.991863	consensus_score=12.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.875173	major_base=C	major_cov=4/6	major_frequency=8.333e-01	minor_base=T	minor_cov=1/1	new_cov=4/6	polymorphism_frequency=8.333e-01	polymorphism_score=0.0	prediction=consensus	ref_cov=1/1	total_cov=5/7
RA	291	.	NC_000913	1196247	0	A	G	bias_e_value=4603880	bias_p_value=0.991863	consensus_score=15.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.875173	major_base=G	major_cov=4/6	major_frequency=8.333e-01	minor_base=A	minor_cov=1/1	new_cov=4/6	polymorphism_frequency=8.333e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/1	total_cov=5/7
RA	292	.	NC_000913	1251272	0	A	C	bias_e_value=11138.4	bias_p_value=0.00239966	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.2	fisher_strand_p_value=0.0606061	frequency=5.455e-01	ks_quality_p_value=0.00427682	major_base=C	major_cov=0/6	major_frequency=5.455e-01	minor_base=A	minor_cov=3/2	new_cov=0/6	polymorphism_frequency=5.455e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=3/2	total_cov=3/8
RA	293	.	NC_000913	1290881	0	C	T	consensus_score=29.2	frequency=1	major_base=T	major_cov=8/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/2
RA	294	.	NC_000913	1337394	0	A	G	consensus_score=73.2	frequency=1	major_base=G	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	295	.	NC_000913	1353758	0	T	A	consensus_score=104.8	frequency=1	major_base=A	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	296	.	NC_000913	1423284	0	A	C	bias_e_value=4399290	bias_p_value=0.947786	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=0.694765	frequency=2.051e-01	ks_quality_p_value=1	major_base=A	major_cov=16/15	major_frequency=7.949e-01	minor_base=C	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.051e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=16/15	total_cov=20/20
RA	297	.	NC_000913	1423338	0	G	C	bias_e_value=3259140	bias_p_value=0.702151	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.6	fisher_strand_p_value=0.730696	frequency=3.514e-01	ks_quality_p_value=0.459452	major_base=G	major_cov=12/12	major_frequency=6.486e-01	minor_base=C	minor_cov=5/8	new_cov=5/8	polymorphism_frequency=3.514e-01	polymorphism_score=45.5	prediction=polymorphism	ref_cov=12/12	total_cov=17/20
RA	298	.	NC_000913	1423404	0	G	T	bias_e_value=3054160	bias_p_value=0.657991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.2	fisher_strand_p_value=1	frequency=3.889e-01	ks_quality_p_value=0.297351	major_base=G	major_cov=9/13	major_frequency=6.111e-01	minor_base=T	minor_cov=6/8	new_cov=6/8	polymorphism_frequency=3.889e-01	polymorphism_score=33.0	prediction=polymorphism	ref_cov=9/13	total_cov=15/22
RA	299	.	NC_000913	1428945	0	C	T	bias_e_value=3158840	bias_p_value=0.680541	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.8	fisher_strand_p_value=0.659247	frequency=2.800e-01	ks_quality_p_value=0.48	major_base=C	major_cov=8/10	major_frequency=7.200e-01	minor_base=T	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.800e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=8/10	total_cov=10/15
RA	300	.	NC_000913	1428954	0	T	A	bias_e_value=3022200	bias_p_value=0.651105	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.4	fisher_strand_p_value=0.454273	frequency=3.103e-01	ks_quality_p_value=0.642164	major_base=T	major_cov=10/10	major_frequency=6.897e-01	minor_base=A	minor_cov=3/6	new_cov=3/6	polymorphism_frequency=3.103e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=10/10	total_cov=13/16
RA	301	.	NC_000913	1428963	0	G	T	bias_e_value=4092380	bias_p_value=0.881666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.6	fisher_strand_p_value=0.702107	frequency=3.793e-01	ks_quality_p_value=0.790209	major_base=G	major_cov=9/9	major_frequency=6.207e-01	minor_base=T	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=3.793e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=9/9	total_cov=14/16
RA	302	.	NC_000913	1428966	0	T	G	bias_e_value=2076320	bias_p_value=0.447324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.2	fisher_strand_p_value=0.449725	frequency=3.793e-01	ks_quality_p_value=0.348666	major_base=T	major_cov=10/8	major_frequency=6.207e-01	minor_base=G	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=3.793e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=10/8	total_cov=14/15
RA	303	.	NC_000913	1428978	0	G	A	bias_e_value=121175	bias_p_value=0.026106	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.1	fisher_strand_p_value=0.202137	frequency=4.722e-01	ks_quality_p_value=0.0198066	major_base=G	major_cov=11/8	major_frequency=5.278e-01	minor_base=A	minor_cov=6/11	new_cov=6/11	polymorphism_frequency=4.722e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=11/8	total_cov=17/19
RA	304	.	NC_000913	1429021	0	T	A	bias_e_value=2975080	bias_p_value=0.640952	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.5	fisher_strand_p_value=0.757862	frequency=4.878e-01	ks_quality_p_value=0.374171	major_base=T	major_cov=11/10	major_frequency=5.122e-01	minor_base=A	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=4.878e-01	polymorphism_score=66.0	prediction=polymorphism	ref_cov=11/10	total_cov=20/21
RA	305	.	NC_000913	1429022	0	T	A	bias_e_value=3990940	bias_p_value=0.859811	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=0.757862	frequency=4.878e-01	ks_quality_p_value=0.685675	major_base=T	major_cov=11/10	major_frequency=5.122e-01	minor_base=A	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=4.878e-01	polymorphism_score=65.1	prediction=polymorphism	ref_cov=11/10	total_cov=20/21
RA	306	.	NC_000913	1429024	0	A	C	bias_e_value=3754130	bias_p_value=0.808792	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.6	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.449329	major_base=C	major_cov=9/11	major_frequency=5.000e-01	minor_base=A	minor_cov=10/10	new_cov=9/11	polymorphism_frequency=5.000e-01	polymorphism_score=56.2	prediction=polymorphism	ref_cov=10/10	total_cov=19/21
RA	307	.	NC_000913	1429027	0	C	T	bias_e_value=2148330	bias_p_value=0.462837	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.7	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.165299	major_base=C	major_cov=10/10	major_frequency=5.000e-01	minor_base=T	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=5.000e-01	polymorphism_score=54.9	prediction=polymorphism	ref_cov=10/10	total_cov=19/21
RA	308	.	NC_000913	1429069	0	T	A	bias_e_value=4087040	bias_p_value=0.880515	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.7	fisher_strand_p_value=0.563923	frequency=5.319e-01	ks_quality_p_value=0.980388	major_base=A	major_cov=11/14	major_frequency=5.319e-01	minor_base=T	minor_cov=12/10	new_cov=11/14	polymorphism_frequency=5.319e-01	polymorphism_score=62.7	prediction=polymorphism	ref_cov=12/10	total_cov=24/24
RA	309	.	NC_000913	1429072	0	A	C	bias_e_value=3500780	bias_p_value=0.75421	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.386809	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=10/14	major_frequency=5.000e-01	minor_base=A	minor_cov=14/10	new_cov=10/14	polymorphism_frequency=5.000e-01	polymorphism_score=56.2	prediction=polymorphism	ref_cov=14/10	total_cov=25/24
RA	310	.	NC_000913	1429111	0	A	C	bias_e_value=2500870	bias_p_value=0.538789	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.1	fisher_strand_p_value=0.278468	frequency=5.893e-01	ks_quality_p_value=0.756551	major_base=C	major_cov=16/17	major_frequency=5.893e-01	minor_base=A	minor_cov=15/8	new_cov=16/17	polymorphism_frequency=5.893e-01	polymorphism_score=60.8	prediction=polymorphism	ref_cov=15/8	total_cov=31/25
RA	311	.	NC_000913	1429114	0	C	T	bias_e_value=1895610	bias_p_value=0.408391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.7	fisher_strand_p_value=0.170813	frequency=5.893e-01	ks_quality_p_value=0.799294	major_base=T	major_cov=16/17	major_frequency=5.893e-01	minor_base=C	minor_cov=16/7	new_cov=16/17	polymorphism_frequency=5.893e-01	polymorphism_score=70.0	prediction=polymorphism	ref_cov=16/7	total_cov=32/24
RA	312	.	NC_000913	1429126	0	A	C	bias_e_value=3077280	bias_p_value=0.662971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.3	fisher_strand_p_value=0.304546	frequency=5.593e-01	ks_quality_p_value=0.989937	major_base=C	major_cov=17/16	major_frequency=5.593e-01	minor_base=A	minor_cov=17/9	new_cov=17/16	polymorphism_frequency=5.593e-01	polymorphism_score=69.8	prediction=polymorphism	ref_cov=17/9	total_cov=34/25
RA	313	.	NC_000913	1429128	0	A	G	bias_e_value=2942520	bias_p_value=0.633939	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.3	fisher_strand_p_value=0.304546	frequency=5.593e-01	ks_quality_p_value=0.912992	major_base=G	major_cov=17/16	major_frequency=5.593e-01	minor_base=A	minor_cov=17/9	new_cov=17/16	polymorphism_frequency=5.593e-01	polymorphism_score=66.3	prediction=polymorphism	ref_cov=17/9	total_cov=34/25
RA	314	.	NC_000913	1429160	0	C	G	bias_e_value=2133980	bias_p_value=0.459746	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.4	fisher_strand_p_value=0.195173	frequency=5.738e-01	ks_quality_p_value=0.838161	major_base=G	major_cov=18/17	major_frequency=5.738e-01	minor_base=C	minor_cov=18/8	new_cov=18/17	polymorphism_frequency=5.738e-01	polymorphism_score=82.4	prediction=polymorphism	ref_cov=18/8	total_cov=36/25
RA	315	.	NC_000913	1429164	0	C	G	bias_e_value=3002570	bias_p_value=0.646875	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.0	fisher_strand_p_value=0.288301	frequency=5.667e-01	ks_quality_p_value=1	major_base=G	major_cov=18/16	major_frequency=5.667e-01	minor_base=C	minor_cov=18/8	new_cov=18/16	polymorphism_frequency=5.667e-01	polymorphism_score=78.7	prediction=polymorphism	ref_cov=18/8	total_cov=36/24
RA	316	.	NC_000913	1429171	0	A	G	bias_e_value=1207790	bias_p_value=0.260206	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=0.12687	frequency=5.556e-01	ks_quality_p_value=0.563822	major_base=G	major_cov=18/17	major_frequency=5.556e-01	minor_base=A	minor_cov=20/8	new_cov=18/17	polymorphism_frequency=5.556e-01	polymorphism_score=75.7	prediction=polymorphism	ref_cov=20/8	total_cov=38/25
RA	317	.	NC_000913	1429204	0	C	T	bias_e_value=207803	bias_p_value=0.0447692	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.9	fisher_strand_p_value=0.424183	frequency=4.912e-01	ks_quality_p_value=0.0179575	major_base=C	major_cov=19/10	major_frequency=5.088e-01	minor_base=T	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=4.912e-01	polymorphism_score=79.9	prediction=polymorphism	ref_cov=19/10	total_cov=34/23
RA	318	.	NC_000913	1429207	0	T	G	bias_e_value=489110	bias_p_value=0.105374	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.0	fisher_strand_p_value=0.424183	frequency=4.912e-01	ks_quality_p_value=0.0514982	major_base=T	major_cov=19/10	major_frequency=5.088e-01	minor_base=G	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=4.912e-01	polymorphism_score=94.1	prediction=polymorphism	ref_cov=19/10	total_cov=34/23
RA	319	.	NC_000913	1429225	0	C	T	bias_e_value=1705850	bias_p_value=0.36751	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.9	fisher_strand_p_value=0.558893	frequency=4.792e-01	ks_quality_p_value=0.208906	major_base=C	major_cov=16/9	major_frequency=5.208e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.792e-01	polymorphism_score=62.6	prediction=polymorphism	ref_cov=16/9	total_cov=28/20
RA	320	.	NC_000913	1429228	0	T	C	bias_e_value=329549	bias_p_value=0.0709981	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.9	fisher_strand_p_value=0.558893	frequency=4.792e-01	ks_quality_p_value=0.0238974	major_base=T	major_cov=16/9	major_frequency=5.208e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.792e-01	polymorphism_score=66.2	prediction=polymorphism	ref_cov=16/9	total_cov=28/20
RA	321	.	NC_000913	1429231	0	T	C	bias_e_value=134657	bias_p_value=0.0290107	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.0	fisher_strand_p_value=0.561215	frequency=4.894e-01	ks_quality_p_value=0.00808237	major_base=T	major_cov=15/9	major_frequency=5.106e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.894e-01	polymorphism_score=71.2	prediction=polymorphism	ref_cov=15/9	total_cov=27/20
RA	322	.	NC_000913	1429235	0	T	C	bias_e_value=4078850	bias_p_value=0.878749	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.0	fisher_strand_p_value=0.549897	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=12/11	major_frequency=5.000e-01	minor_base=T	minor_cov=15/8	new_cov=12/11	polymorphism_frequency=5.000e-01	polymorphism_score=62.8	prediction=polymorphism	ref_cov=15/8	total_cov=27/19
RA	323	.	NC_000913	1429236	0	T	A	bias_e_value=2346720	bias_p_value=0.505579	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.8	fisher_strand_p_value=0.205701	frequency=5.349e-01	ks_quality_p_value=0.923789	major_base=A	major_cov=12/11	major_frequency=5.349e-01	minor_base=T	minor_cov=15/5	new_cov=12/11	polymorphism_frequency=5.349e-01	polymorphism_score=61.4	prediction=polymorphism	ref_cov=15/5	total_cov=27/19
RA	324	.	NC_000913	1429240	0	G	T	bias_e_value=2919900	bias_p_value=0.629065	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.549897	frequency=5.000e-01	ks_quality_p_value=0.498749	major_base=G	major_cov=15/8	major_frequency=5.000e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=5.000e-01	polymorphism_score=66.7	prediction=polymorphism	ref_cov=15/8	total_cov=27/19
RA	325	.	NC_000913	1429243	0	A	C	bias_e_value=1287340	bias_p_value=0.277345	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.8	fisher_strand_p_value=0.394359	frequency=4.694e-01	ks_quality_p_value=0.19815	major_base=A	major_cov=17/9	major_frequency=5.306e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.694e-01	polymorphism_score=66.5	prediction=polymorphism	ref_cov=17/9	total_cov=29/20
RA	326	.	NC_000913	1429246	0	A	T	bias_e_value=111885	bias_p_value=0.0241046	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.7	fisher_strand_p_value=0.376701	frequency=4.792e-01	ks_quality_p_value=0.00967381	major_base=A	major_cov=17/8	major_frequency=5.208e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.792e-01	polymorphism_score=76.5	prediction=polymorphism	ref_cov=17/8	total_cov=29/20
RA	327	.	NC_000913	1429249	0	C	T	bias_e_value=369206	bias_p_value=0.0795419	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.0	fisher_strand_p_value=0.380129	frequency=4.894e-01	ks_quality_p_value=0.0404317	major_base=C	major_cov=16/8	major_frequency=5.106e-01	minor_base=T	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.894e-01	polymorphism_score=68.4	prediction=polymorphism	ref_cov=16/8	total_cov=28/20
RA	328	.	NC_000913	1429252	0	G	A	bias_e_value=1020410	bias_p_value=0.219838	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.4	fisher_strand_p_value=0.567455	frequency=4.600e-01	ks_quality_p_value=0.100172	major_base=G	major_cov=17/10	major_frequency=5.400e-01	minor_base=A	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.600e-01	polymorphism_score=61.1	prediction=polymorphism	ref_cov=17/10	total_cov=29/21
RA	329	.	NC_000913	1429255	0	G	A	bias_e_value=2034820	bias_p_value=0.438382	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.4	fisher_strand_p_value=0.567455	frequency=4.600e-01	ks_quality_p_value=0.267893	major_base=G	major_cov=17/10	major_frequency=5.400e-01	minor_base=A	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.600e-01	polymorphism_score=62.2	prediction=polymorphism	ref_cov=17/10	total_cov=29/21
RA	330	.	NC_000913	1429258	0	A	G	bias_e_value=2621390	bias_p_value=0.564754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.1	fisher_strand_p_value=0.580965	frequency=4.510e-01	ks_quality_p_value=0.392074	major_base=A	major_cov=17/11	major_frequency=5.490e-01	minor_base=G	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.510e-01	polymorphism_score=61.5	prediction=polymorphism	ref_cov=17/11	total_cov=29/22
RA	331	.	NC_000913	1429261	0	T	C	bias_e_value=3760290	bias_p_value=0.810119	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.3	fisher_strand_p_value=0.58959	frequency=4.340e-01	ks_quality_p_value=0.764924	major_base=T	major_cov=18/12	major_frequency=5.660e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.340e-01	polymorphism_score=60.2	prediction=polymorphism	ref_cov=18/12	total_cov=31/23
RA	332	.	NC_000913	1429273	0	T	C	bias_e_value=2510420	bias_p_value=0.540847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.39652	frequency=4.340e-01	ks_quality_p_value=0.534651	major_base=T	major_cov=20/10	major_frequency=5.660e-01	minor_base=C	minor_cov=12/11	new_cov=12/11	polymorphism_frequency=4.340e-01	polymorphism_score=71.1	prediction=polymorphism	ref_cov=20/10	total_cov=32/22
RA	333	.	NC_000913	1429291	0	T	A	bias_e_value=1520270	bias_p_value=0.327527	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.5	fisher_strand_p_value=0.279997	frequency=4.340e-01	ks_quality_p_value=0.352922	major_base=T	major_cov=19/11	major_frequency=5.660e-01	minor_base=A	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=4.340e-01	polymorphism_score=74.5	prediction=polymorphism	ref_cov=19/11	total_cov=30/24
RA	334	.	NC_000913	1429297	0	C	G	bias_e_value=1246610	bias_p_value=0.26857	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.2	fisher_strand_p_value=0.409796	frequency=4.259e-01	ks_quality_p_value=0.182358	major_base=C	major_cov=19/12	major_frequency=5.741e-01	minor_base=G	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=4.259e-01	polymorphism_score=79.6	prediction=polymorphism	ref_cov=19/12	total_cov=30/24
RA	335	.	NC_000913	1429300	0	T	G	bias_e_value=112822	bias_p_value=0.0243064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.1	fisher_strand_p_value=0.424522	frequency=4.182e-01	ks_quality_p_value=0.00866881	major_base=T	major_cov=19/13	major_frequency=5.818e-01	minor_base=G	minor_cov=11/12	new_cov=11/12	polymorphism_frequency=4.182e-01	polymorphism_score=68.4	prediction=polymorphism	ref_cov=19/13	total_cov=30/25
RA	336	.	NC_000913	1429319	0	G	T	bias_e_value=2295180	bias_p_value=0.494474	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.5	fisher_strand_p_value=0.583542	frequency=4.444e-01	ks_quality_p_value=0.3143	major_base=G	major_cov=18/12	major_frequency=5.556e-01	minor_base=T	minor_cov=12/12	new_cov=12/12	polymorphism_frequency=4.444e-01	polymorphism_score=69.2	prediction=polymorphism	ref_cov=18/12	total_cov=30/24
RA	337	.	NC_000913	1429345	0	T	G	bias_e_value=2850130	bias_p_value=0.614033	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.4	fisher_strand_p_value=0.267507	frequency=3.704e-01	ks_quality_p_value=0.982508	major_base=T	major_cov=21/13	major_frequency=6.296e-01	minor_base=G	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=3.704e-01	polymorphism_score=46.6	prediction=polymorphism	ref_cov=21/13	total_cov=30/24
RA	338	.	NC_000913	1429353	0	C	T	bias_e_value=701458	bias_p_value=0.151123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.9	fisher_strand_p_value=0.267116	frequency=3.585e-01	ks_quality_p_value=0.129678	major_base=C	major_cov=20/14	major_frequency=6.415e-01	minor_base=T	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=3.585e-01	polymorphism_score=49.0	prediction=polymorphism	ref_cov=20/14	total_cov=28/25
RA	339	.	NC_000913	1429354	0	A	G	bias_e_value=2172210	bias_p_value=0.467982	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.1	fisher_strand_p_value=0.267116	frequency=3.585e-01	ks_quality_p_value=0.62958	major_base=A	major_cov=20/14	major_frequency=6.415e-01	minor_base=G	minor_cov=8/11	new_cov=8/11	polymorphism_frequency=3.585e-01	polymorphism_score=48.4	prediction=polymorphism	ref_cov=20/14	total_cov=28/25
RA	340	.	NC_000913	1429360	0	C	T	bias_e_value=3299190	bias_p_value=0.710779	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.7	fisher_strand_p_value=0.408609	frequency=3.774e-01	ks_quality_p_value=0.841175	major_base=C	major_cov=19/14	major_frequency=6.226e-01	minor_base=T	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=3.774e-01	polymorphism_score=53.4	prediction=polymorphism	ref_cov=19/14	total_cov=29/25
RA	341	.	NC_000913	1429364	0	T	C	bias_e_value=607503	bias_p_value=0.130881	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.4	fisher_strand_p_value=0.401706	frequency=3.704e-01	ks_quality_p_value=0.0716354	major_base=T	major_cov=20/14	major_frequency=6.296e-01	minor_base=C	minor_cov=9/11	new_cov=9/11	polymorphism_frequency=3.704e-01	polymorphism_score=59.9	prediction=polymorphism	ref_cov=20/14	total_cov=29/25
RA	342	.	NC_000913	1429404	0	C	T	bias_e_value=1380510	bias_p_value=0.297418	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.5	fisher_strand_p_value=0.576483	frequency=3.158e-01	ks_quality_p_value=0.149481	major_base=C	major_cov=21/18	major_frequency=6.842e-01	minor_base=T	minor_cov=8/10	new_cov=8/10	polymorphism_frequency=3.158e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=21/18	total_cov=29/28
RA	343	.	NC_000913	1429416	0	A	G	bias_e_value=1917720	bias_p_value=0.413156	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.5	fisher_strand_p_value=0.763239	frequency=2.642e-01	ks_quality_p_value=0.182032	major_base=A	major_cov=20/19	major_frequency=7.358e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.642e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=20/19	total_cov=28/25
RA	344	.	NC_000913	1429417	0	C	T	bias_e_value=1469830	bias_p_value=0.31666	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.2	fisher_strand_p_value=0.763239	frequency=2.642e-01	ks_quality_p_value=0.123382	major_base=C	major_cov=20/19	major_frequency=7.358e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=2.642e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=20/19	total_cov=28/25
RA	345	.	NC_000913	1429425	0	C	A	bias_e_value=1854720	bias_p_value=0.399582	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.6	fisher_strand_p_value=1	frequency=2.453e-01	ks_quality_p_value=0.132142	major_base=C	major_cov=21/19	major_frequency=7.547e-01	minor_base=A	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.453e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=21/19	total_cov=28/26
RA	346	.	NC_000913	1429435	0	G	A	bias_e_value=3816540	bias_p_value=0.822238	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.6	fisher_strand_p_value=1	frequency=2.549e-01	ks_quality_p_value=0.466544	major_base=G	major_cov=21/17	major_frequency=7.451e-01	minor_base=A	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.549e-01	polymorphism_score=29.2	prediction=polymorphism	ref_cov=21/17	total_cov=28/25
RA	347	.	NC_000913	1429442	0	A	G	bias_e_value=2101840	bias_p_value=0.452821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.5	fisher_strand_p_value=1	frequency=2.105e-01	ks_quality_p_value=0.159786	major_base=A	major_cov=23/22	major_frequency=7.895e-01	minor_base=G	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.105e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=23/22	total_cov=29/28
RA	348	.	NC_000913	1429444	0	T	C	bias_e_value=1697190	bias_p_value=0.365643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.1	fisher_strand_p_value=1	frequency=2.308e-01	ks_quality_p_value=0.115888	major_base=T	major_cov=21/19	major_frequency=7.692e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.308e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=21/19	total_cov=29/27
RA	349	.	NC_000913	1429453	0	C	T	bias_e_value=1043450	bias_p_value=0.224802	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.0	fisher_strand_p_value=0.744548	frequency=2.222e-01	ks_quality_p_value=0.078683	major_base=C	major_cov=22/20	major_frequency=7.778e-01	minor_base=T	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.222e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=22/20	total_cov=27/28
RA	350	.	NC_000913	1429454	0	A	G	bias_e_value=1606330	bias_p_value=0.346069	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.2	fisher_strand_p_value=0.745814	frequency=2.182e-01	ks_quality_p_value=0.143427	major_base=A	major_cov=22/21	major_frequency=7.818e-01	minor_base=G	minor_cov=5/7	new_cov=5/7	polymorphism_frequency=2.182e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=22/21	total_cov=27/28
RA	351	.	NC_000913	1429470	0	C	T	bias_e_value=4103450	bias_p_value=0.884049	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.7	fisher_strand_p_value=1	frequency=2.000e-01	ks_quality_p_value=0.558881	major_base=C	major_cov=22/22	major_frequency=8.000e-01	minor_base=T	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.000e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=22/22	total_cov=29/28
RA	352	.	NC_000913	1429510	0	A	C	bias_e_value=3864720	bias_p_value=0.832617	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.4	fisher_strand_p_value=0.759015	frequency=2.333e-01	ks_quality_p_value=0.632959	major_base=A	major_cov=27/19	major_frequency=7.667e-01	minor_base=C	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=2.333e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=27/19	total_cov=34/26
RA	353	.	NC_000913	1429522	0	A	C	bias_e_value=3396030	bias_p_value=0.731643	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.9	fisher_strand_p_value=0.757985	frequency=2.167e-01	ks_quality_p_value=0.479939	major_base=A	major_cov=28/19	major_frequency=7.833e-01	minor_base=C	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=2.167e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=28/19	total_cov=35/25
RA	354	.	NC_000913	1429534	0	C	T	bias_e_value=4345510	bias_p_value=0.9362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=1	frequency=2.000e-01	ks_quality_p_value=0.664757	major_base=C	major_cov=27/21	major_frequency=8.000e-01	minor_base=T	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.000e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=27/21	total_cov=34/26
RA	355	.	NC_000913	1429537	0	G	A	bias_e_value=1868510	bias_p_value=0.402552	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.7	fisher_strand_p_value=1	frequency=2.034e-01	ks_quality_p_value=0.133614	major_base=G	major_cov=27/20	major_frequency=7.966e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.034e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=27/20	total_cov=34/26
RA	356	.	NC_000913	1429543	0	G	A	bias_e_value=2857750	bias_p_value=0.615675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.0	fisher_strand_p_value=1	frequency=2.069e-01	ks_quality_p_value=0.264059	major_base=G	major_cov=26/20	major_frequency=7.931e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.069e-01	polymorphism_score=25.5	prediction=polymorphism	ref_cov=26/20	total_cov=33/25
RA	357	.	NC_000913	1429550	0	T	G	bias_e_value=4636690	bias_p_value=0.998931	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.4	fisher_strand_p_value=1	frequency=2.407e-01	ks_quality_p_value=0.954112	major_base=T	major_cov=24/17	major_frequency=7.593e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.407e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=24/17	total_cov=33/22
RA	358	.	NC_000913	1429551	0	C	A	bias_e_value=3244650	bias_p_value=0.699029	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.9	fisher_strand_p_value=1	frequency=2.000e-01	ks_quality_p_value=0.332871	major_base=C	major_cov=26/18	major_frequency=8.000e-01	minor_base=A	minor_cov=7/4	new_cov=7/4	polymorphism_frequency=2.000e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=26/18	total_cov=33/22
RA	359	.	NC_000913	1429558	0	T	C	bias_e_value=3985940	bias_p_value=0.858733	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.0	fisher_strand_p_value=0.520929	frequency=2.407e-01	ks_quality_p_value=0.994387	major_base=T	major_cov=25/16	major_frequency=7.593e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=2.407e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=25/16	total_cov=32/24
RA	360	.	NC_000913	1429562	0	A	G	bias_e_value=4211490	bias_p_value=0.907325	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=0.743792	frequency=2.143e-01	ks_quality_p_value=0.808867	major_base=A	major_cov=26/18	major_frequency=7.857e-01	minor_base=G	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=2.143e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=26/18	total_cov=32/24
RA	361	.	NC_000913	1429569	0	G	A	bias_e_value=1183860	bias_p_value=0.255052	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.9	fisher_strand_p_value=0.193869	frequency=2.075e-01	ks_quality_p_value=0.358945	major_base=G	major_cov=25/17	major_frequency=7.925e-01	minor_base=A	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=2.075e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=25/17	total_cov=29/25
RA	362	.	NC_000913	1429571	0	A	G	bias_e_value=974685	bias_p_value=0.209987	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.3	fisher_strand_p_value=0.105201	frequency=2.222e-01	ks_quality_p_value=0.508013	major_base=A	major_cov=26/16	major_frequency=7.778e-01	minor_base=G	minor_cov=4/8	new_cov=4/8	polymorphism_frequency=2.222e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=26/16	total_cov=30/25
RA	363	.	NC_000913	1429580	0	A	G	bias_e_value=3439300	bias_p_value=0.740965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.8	fisher_strand_p_value=0.390112	frequency=2.931e-01	ks_quality_p_value=0.956451	major_base=A	major_cov=25/16	major_frequency=7.069e-01	minor_base=G	minor_cov=8/9	new_cov=8/9	polymorphism_frequency=2.931e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=25/16	total_cov=33/25
RA	364	.	NC_000913	1429597	0	A	G	bias_e_value=1828380	bias_p_value=0.393907	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.9	fisher_strand_p_value=0.264233	frequency=2.857e-01	ks_quality_p_value=0.489542	major_base=A	major_cov=26/19	major_frequency=7.143e-01	minor_base=G	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=2.857e-01	polymorphism_score=46.1	prediction=polymorphism	ref_cov=26/19	total_cov=33/30
RA	365	.	NC_000913	1429598	0	T	G	bias_e_value=2610280	bias_p_value=0.562361	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.1	fisher_strand_p_value=0.264233	frequency=2.857e-01	ks_quality_p_value=0.85594	major_base=T	major_cov=26/19	major_frequency=7.143e-01	minor_base=G	minor_cov=7/11	new_cov=7/11	polymorphism_frequency=2.857e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=26/19	total_cov=33/30
RA	366	.	NC_000913	1429599	0	C	A	bias_e_value=922920	bias_p_value=0.198834	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.9	fisher_strand_p_value=0.107137	frequency=2.969e-01	ks_quality_p_value=0.463728	major_base=C	major_cov=27/18	major_frequency=7.031e-01	minor_base=A	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=2.969e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=27/18	total_cov=34/30
RA	367	.	NC_000913	1429609	0	T	C	bias_e_value=1568520	bias_p_value=0.337922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.8	fisher_strand_p_value=0.103352	frequency=3.226e-01	ks_quality_p_value=1	major_base=T	major_cov=25/17	major_frequency=6.774e-01	minor_base=C	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=3.226e-01	polymorphism_score=45.8	prediction=polymorphism	ref_cov=25/17	total_cov=32/31
RA	368	.	NC_000913	1429612	0	C	A	bias_e_value=1575690	bias_p_value=0.339468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.3	fisher_strand_p_value=0.104035	frequency=3.065e-01	ks_quality_p_value=1	major_base=C	major_cov=26/17	major_frequency=6.935e-01	minor_base=A	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=3.065e-01	polymorphism_score=36.2	prediction=polymorphism	ref_cov=26/17	total_cov=33/32
RA	369	.	NC_000913	1429615	0	T	C	bias_e_value=1364070	bias_p_value=0.293877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.7	fisher_strand_p_value=0.111769	frequency=3.077e-01	ks_quality_p_value=0.758113	major_base=T	major_cov=26/19	major_frequency=6.923e-01	minor_base=C	minor_cov=7/13	new_cov=7/13	polymorphism_frequency=3.077e-01	polymorphism_score=46.4	prediction=polymorphism	ref_cov=26/19	total_cov=33/32
RA	370	.	NC_000913	1429632	0	G	A	bias_e_value=3055590	bias_p_value=0.658298	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.8	fisher_strand_p_value=0.297605	frequency=3.284e-01	ks_quality_p_value=1	major_base=G	major_cov=26/19	major_frequency=6.716e-01	minor_base=A	minor_cov=9/13	new_cov=9/13	polymorphism_frequency=3.284e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=26/19	total_cov=35/33
RA	371	.	NC_000913	1429682	0	T	G	bias_e_value=3309910	bias_p_value=0.71309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.4	fisher_strand_p_value=0.36474	frequency=4.805e-01	ks_quality_p_value=0.948296	major_base=T	major_cov=24/16	major_frequency=5.195e-01	minor_base=G	minor_cov=18/19	new_cov=18/19	polymorphism_frequency=4.805e-01	polymorphism_score=90.4	prediction=polymorphism	ref_cov=24/16	total_cov=42/35
RA	372	.	NC_000913	1429692	0	T	A	bias_e_value=2698100	bias_p_value=0.581279	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.495925	frequency=4.935e-01	ks_quality_p_value=0.48221	major_base=T	major_cov=23/16	major_frequency=5.065e-01	minor_base=A	minor_cov=19/19	new_cov=19/19	polymorphism_frequency=4.935e-01	polymorphism_score=116.3	prediction=polymorphism	ref_cov=23/16	total_cov=43/36
RA	373	.	NC_000913	1429702	0	A	C	bias_e_value=360993	bias_p_value=0.0777726	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.495925	frequency=5.065e-01	ks_quality_p_value=0.0301395	major_base=C	major_cov=19/20	major_frequency=5.065e-01	minor_base=A	minor_cov=22/16	new_cov=19/20	polymorphism_frequency=5.065e-01	polymorphism_score=111.4	prediction=polymorphism	ref_cov=22/16	total_cov=41/36
RA	374	.	NC_000913	1429708	0	A	G	bias_e_value=3509430	bias_p_value=0.756074	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.9	fisher_strand_p_value=0.660721	frequency=5.250e-01	ks_quality_p_value=0.588413	major_base=G	major_cov=21/21	major_frequency=5.250e-01	minor_base=A	minor_cov=21/17	new_cov=21/21	polymorphism_frequency=5.250e-01	polymorphism_score=103.5	prediction=polymorphism	ref_cov=21/17	total_cov=42/38
RA	375	.	NC_000913	1429714	0	A	C	bias_e_value=4235490	bias_p_value=0.912497	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.0	fisher_strand_p_value=0.657515	frequency=5.185e-01	ks_quality_p_value=0.930747	major_base=C	major_cov=21/21	major_frequency=5.185e-01	minor_base=A	minor_cov=22/17	new_cov=21/21	polymorphism_frequency=5.185e-01	polymorphism_score=103.6	prediction=polymorphism	ref_cov=22/17	total_cov=43/38
RA	376	.	NC_000913	1429724	0	A	G	bias_e_value=4002620	bias_p_value=0.862327	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.5	fisher_strand_p_value=0.666164	frequency=5.059e-01	ks_quality_p_value=0.785862	major_base=G	major_cov=21/22	major_frequency=5.059e-01	minor_base=A	minor_cov=23/19	new_cov=21/22	polymorphism_frequency=5.059e-01	polymorphism_score=113.8	prediction=polymorphism	ref_cov=23/19	total_cov=44/41
RA	377	.	NC_000913	1429732	0	G	A	bias_e_value=3430060	bias_p_value=0.738975	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=1	frequency=5.181e-01	ks_quality_p_value=0.37111	major_base=A	major_cov=22/21	major_frequency=5.181e-01	minor_base=G	minor_cov=21/19	new_cov=22/21	polymorphism_frequency=5.181e-01	polymorphism_score=115.5	prediction=polymorphism	ref_cov=21/19	total_cov=43/41
RA	378	.	NC_000913	1429735	0	A	G	bias_e_value=2552390	bias_p_value=0.549888	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.21788	major_base=G	major_cov=21/21	major_frequency=5.000e-01	minor_base=A	minor_cov=22/20	new_cov=21/21	polymorphism_frequency=5.000e-01	polymorphism_score=114.5	prediction=polymorphism	ref_cov=22/20	total_cov=43/41
RA	379	.	NC_000913	1429741	0	A	G	bias_e_value=2089440	bias_p_value=0.45015	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.4	fisher_strand_p_value=1	frequency=5.063e-01	ks_quality_p_value=0.158333	major_base=G	major_cov=20/20	major_frequency=5.063e-01	minor_base=A	minor_cov=19/20	new_cov=20/20	polymorphism_frequency=5.063e-01	polymorphism_score=111.2	prediction=polymorphism	ref_cov=19/20	total_cov=40/40
RA	380	.	NC_000913	1429744	0	T	C	bias_e_value=3976900	bias_p_value=0.856786	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	fisher_strand_p_value=1	frequency=4.875e-01	ks_quality_p_value=0.515057	major_base=T	major_cov=20/21	major_frequency=5.125e-01	minor_base=C	minor_cov=20/19	new_cov=20/19	polymorphism_frequency=4.875e-01	polymorphism_score=107.9	prediction=polymorphism	ref_cov=20/21	total_cov=40/41
RA	381	.	NC_000913	1429747	0	G	C	bias_e_value=4617240	bias_p_value=0.994741	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.3	fisher_strand_p_value=1	frequency=4.938e-01	ks_quality_p_value=0.899215	major_base=G	major_cov=20/21	major_frequency=5.062e-01	minor_base=C	minor_cov=20/20	new_cov=20/20	polymorphism_frequency=4.938e-01	polymorphism_score=137.2	prediction=polymorphism	ref_cov=20/21	total_cov=40/41
RA	382	.	NC_000913	1429750	0	C	T	bias_e_value=4479.33	bias_p_value=0.00096503	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.5	fisher_strand_p_value=0.823147	frequency=4.875e-01	ks_quality_p_value=0.000114123	major_base=C	major_cov=19/22	major_frequency=5.125e-01	minor_base=T	minor_cov=20/19	new_cov=20/19	polymorphism_frequency=4.875e-01	polymorphism_score=108.9	prediction=polymorphism	ref_cov=19/22	total_cov=40/41
RA	383	.	NC_000913	1429753	0	G	A	bias_e_value=41033.1	bias_p_value=0.0088402	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.5	fisher_strand_p_value=0.823147	frequency=4.875e-01	ks_quality_p_value=0.0013804	major_base=G	major_cov=19/22	major_frequency=5.125e-01	minor_base=A	minor_cov=20/19	new_cov=20/19	polymorphism_frequency=4.875e-01	polymorphism_score=118.7	prediction=polymorphism	ref_cov=19/22	total_cov=39/42
RA	384	.	NC_000913	1429756	0	C	A	bias_e_value=34132.2	bias_p_value=0.00735345	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.5	fisher_strand_p_value=0.82533	frequency=4.938e-01	ks_quality_p_value=0.00111498	major_base=C	major_cov=19/22	major_frequency=5.062e-01	minor_base=A	minor_cov=20/20	new_cov=20/20	polymorphism_frequency=4.938e-01	polymorphism_score=129.9	prediction=polymorphism	ref_cov=19/22	total_cov=39/42
RA	385	.	NC_000913	1429759	0	G	A	bias_e_value=481995	bias_p_value=0.103841	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.3	fisher_strand_p_value=0.654921	frequency=4.937e-01	ks_quality_p_value=0.032744	major_base=G	major_cov=18/22	major_frequency=5.063e-01	minor_base=A	minor_cov=20/19	new_cov=20/19	polymorphism_frequency=4.937e-01	polymorphism_score=117.0	prediction=polymorphism	ref_cov=18/22	total_cov=38/42
RA	386	.	NC_000913	1429767	0	C	T	bias_e_value=4294200	bias_p_value=0.925144	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.0	fisher_strand_p_value=0.650497	frequency=5.065e-01	ks_quality_p_value=0.982213	major_base=T	major_cov=20/19	major_frequency=5.065e-01	minor_base=C	minor_cov=17/21	new_cov=20/19	polymorphism_frequency=5.065e-01	polymorphism_score=95.9	prediction=polymorphism	ref_cov=17/21	total_cov=37/41
RA	387	.	NC_000913	1429780	0	A	G	bias_e_value=4303840	bias_p_value=0.927222	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.7	fisher_strand_p_value=0.657829	frequency=5.128e-01	ks_quality_p_value=0.978375	major_base=G	major_cov=20/20	major_frequency=5.128e-01	minor_base=A	minor_cov=17/21	new_cov=20/20	polymorphism_frequency=5.128e-01	polymorphism_score=104.3	prediction=polymorphism	ref_cov=17/21	total_cov=37/41
RA	388	.	NC_000913	1429783	0	G	A	bias_e_value=4556830	bias_p_value=0.981725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.9	fisher_strand_p_value=0.818505	frequency=5.200e-01	ks_quality_p_value=0.995736	major_base=A	major_cov=20/19	major_frequency=5.200e-01	minor_base=G	minor_cov=17/19	new_cov=20/19	polymorphism_frequency=5.200e-01	polymorphism_score=86.5	prediction=polymorphism	ref_cov=17/19	total_cov=38/40
RA	389	.	NC_000913	1429816	0	C	T	bias_e_value=4350560	bias_p_value=0.937287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.9	fisher_strand_p_value=0.809403	frequency=4.286e-01	ks_quality_p_value=0.8246	major_base=C	major_cov=19/21	major_frequency=5.714e-01	minor_base=T	minor_cov=16/14	new_cov=16/14	polymorphism_frequency=4.286e-01	polymorphism_score=76.0	prediction=polymorphism	ref_cov=19/21	total_cov=35/35
RA	390	.	NC_000913	1429820	0	A	G	bias_e_value=4026330	bias_p_value=0.867435	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.6	fisher_strand_p_value=0.61701	frequency=4.091e-01	ks_quality_p_value=0.86141	major_base=A	major_cov=18/21	major_frequency=5.909e-01	minor_base=G	minor_cov=15/12	new_cov=15/12	polymorphism_frequency=4.091e-01	polymorphism_score=71.3	prediction=polymorphism	ref_cov=18/21	total_cov=34/34
RA	391	.	NC_000913	1429823	0	A	C	bias_e_value=4518520	bias_p_value=0.973473	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.8	fisher_strand_p_value=0.805647	frequency=4.118e-01	ks_quality_p_value=0.966539	major_base=A	major_cov=19/21	major_frequency=5.882e-01	minor_base=C	minor_cov=15/13	new_cov=15/13	polymorphism_frequency=4.118e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=19/21	total_cov=34/34
RA	392	.	NC_000913	1429851	0	G	A	bias_e_value=459400	bias_p_value=0.0989735	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.9	fisher_strand_p_value=0.183525	frequency=3.966e-01	ks_quality_p_value=0.109999	major_base=G	major_cov=16/19	major_frequency=6.034e-01	minor_base=A	minor_cov=15/8	new_cov=15/8	polymorphism_frequency=3.966e-01	polymorphism_score=62.9	prediction=polymorphism	ref_cov=16/19	total_cov=31/27
RA	393	.	NC_000913	1429858	0	C	T	bias_e_value=3213430	bias_p_value=0.692303	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.0	fisher_strand_p_value=0.389972	frequency=3.585e-01	ks_quality_p_value=0.838028	major_base=C	major_cov=16/18	major_frequency=6.415e-01	minor_base=T	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=3.585e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=16/18	total_cov=29/25
RA	394	.	NC_000913	1429861	0	G	C	bias_e_value=711570	bias_p_value=0.153301	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.3	fisher_strand_p_value=0.263524	frequency=3.519e-01	ks_quality_p_value=0.133911	major_base=G	major_cov=16/19	major_frequency=6.481e-01	minor_base=C	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=3.519e-01	polymorphism_score=69.6	prediction=polymorphism	ref_cov=16/19	total_cov=29/26
RA	395	.	NC_000913	1429863	0	A	G	bias_e_value=253495	bias_p_value=0.0546131	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.2	fisher_strand_p_value=0.402597	frequency=3.276e-01	ks_quality_p_value=0.0240655	major_base=A	major_cov=19/20	major_frequency=6.724e-01	minor_base=G	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=3.276e-01	polymorphism_score=50.6	prediction=polymorphism	ref_cov=19/20	total_cov=31/27
RA	396	.	NC_000913	1429888	0	C	T	bias_e_value=1221180	bias_p_value=0.263092	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.1	fisher_strand_p_value=0.38693	frequency=3.019e-01	ks_quality_p_value=0.187707	major_base=C	major_cov=18/19	major_frequency=6.981e-01	minor_base=T	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=3.019e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=18/19	total_cov=29/26
RA	397	.	NC_000913	1429897	0	T	A	bias_e_value=1865300	bias_p_value=0.401862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.3	fisher_strand_p_value=0.53219	frequency=2.653e-01	ks_quality_p_value=0.25042	major_base=T	major_cov=18/18	major_frequency=7.347e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=2.653e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=18/18	total_cov=26/24
RA	398	.	NC_000913	1429906	0	G	A	bias_e_value=255574	bias_p_value=0.0550609	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.9	fisher_strand_p_value=0.326902	frequency=2.400e-01	ks_quality_p_value=0.0299337	major_base=G	major_cov=18/20	major_frequency=7.600e-01	minor_base=A	minor_cov=8/4	new_cov=8/4	polymorphism_frequency=2.400e-01	polymorphism_score=26.1	prediction=polymorphism	ref_cov=18/20	total_cov=26/24
RA	399	.	NC_000913	1429914	0	G	A	bias_e_value=4568460	bias_p_value=0.984231	consensus_reject=FREQUENCY_CUTOFF	consensus_score=80.6	fisher_strand_p_value=1	frequency=2.245e-01	ks_quality_p_value=0.82775	major_base=G	major_cov=19/19	major_frequency=7.755e-01	minor_base=A	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.245e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=19/19	total_cov=25/24
RA	400	.	NC_000913	1429917	0	A	G	bias_e_value=4296760	bias_p_value=0.925695	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=0.72667	frequency=2.083e-01	ks_quality_p_value=0.88095	major_base=A	major_cov=19/19	major_frequency=7.917e-01	minor_base=G	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.083e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=19/19	total_cov=26/23
RA	401	.	NC_000913	1431832	0	T	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.6	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=1	major_base=T	major_cov=9/4	major_frequency=6.500e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.500e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=9/4	total_cov=14/6
RA	402	.	NC_000913	1431844	0	T	A	bias_e_value=4244440	bias_p_value=0.914425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.2	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.615934	major_base=T	major_cov=9/4	major_frequency=6.500e-01	minor_base=A	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.500e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=9/4	total_cov=14/6
RA	403	.	NC_000913	1431847	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.9	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=1	major_base=T	major_cov=9/4	major_frequency=6.500e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.500e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=9/4	total_cov=14/6
RA	404	.	NC_000913	1431853	0	G	A	bias_e_value=1500370	bias_p_value=0.32324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.8	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.096972	major_base=G	major_cov=10/4	major_frequency=6.667e-01	minor_base=A	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.333e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=10/4	total_cov=15/6
RA	405	.	NC_000913	1431862	0	A	T	bias_e_value=4104200	bias_p_value=0.884211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.7	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.559161	major_base=A	major_cov=9/4	major_frequency=6.500e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.500e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=9/4	total_cov=15/6
RA	406	.	NC_000913	1431864	0	C	T	bias_e_value=3939670	bias_p_value=0.848766	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.1	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.503177	major_base=C	major_cov=10/3	major_frequency=6.500e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.500e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=10/3	total_cov=15/5
RA	407	.	NC_000913	1431868	0	T	G	bias_e_value=4567420	bias_p_value=0.984006	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.5	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.826565	major_base=T	major_cov=10/4	major_frequency=6.667e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.333e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=10/4	total_cov=15/6
RA	408	.	NC_000913	1431874	0	G	A	bias_e_value=2104400	bias_p_value=0.453373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.5	fisher_strand_p_value=1	frequency=3.182e-01	ks_quality_p_value=0.160088	major_base=G	major_cov=11/4	major_frequency=6.818e-01	minor_base=A	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.182e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=11/4	total_cov=16/6
RA	409	.	NC_000913	1431877	0	A	G	bias_e_value=1500370	bias_p_value=0.32324	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.8	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.096972	major_base=A	major_cov=11/3	major_frequency=6.667e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.333e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=11/3	total_cov=16/6
RA	410	.	NC_000913	1431880	0	C	T	bias_e_value=4637590	bias_p_value=0.999125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.4	fisher_strand_p_value=1	frequency=3.182e-01	ks_quality_p_value=0.958463	major_base=C	major_cov=11/4	major_frequency=6.818e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.182e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=11/4	total_cov=16/6
RA	411	.	NC_000913	1431884	0	A	C	bias_e_value=3700480	bias_p_value=0.797234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.0	fisher_strand_p_value=1	frequency=3.182e-01	ks_quality_p_value=0.435163	major_base=A	major_cov=11/4	major_frequency=6.818e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.182e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=11/4	total_cov=16/6
RA	412	.	NC_000913	1431886	0	C	T	bias_e_value=4027710	bias_p_value=0.867732	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.7	fisher_strand_p_value=1	frequency=3.182e-01	ks_quality_p_value=0.53197	major_base=C	major_cov=11/4	major_frequency=6.818e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=3.182e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=11/4	total_cov=17/6
RA	413	.	NC_000913	1431898	0	T	A	bias_e_value=4575410	bias_p_value=0.985728	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.3	fisher_strand_p_value=1	frequency=2.917e-01	ks_quality_p_value=0.835879	major_base=T	major_cov=11/6	major_frequency=7.083e-01	minor_base=A	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.917e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=11/6	total_cov=16/8
RA	414	.	NC_000913	1431907	0	G	A	bias_e_value=339911	bias_p_value=0.0732306	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=1	frequency=2.692e-01	ks_quality_p_value=0.0138757	major_base=G	major_cov=12/7	major_frequency=7.308e-01	minor_base=A	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.692e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=12/7	total_cov=17/9
RA	415	.	NC_000913	1431910	0	T	C	bias_e_value=3462540	bias_p_value=0.745971	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.6	fisher_strand_p_value=1	frequency=2.692e-01	ks_quality_p_value=0.378235	major_base=T	major_cov=12/7	major_frequency=7.308e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.692e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=12/7	total_cov=17/9
RA	416	.	NC_000913	1431916	0	C	G	bias_e_value=1682040	bias_p_value=0.362379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.4	fisher_strand_p_value=0.676508	frequency=2.414e-01	ks_quality_p_value=0.169072	major_base=C	major_cov=13/9	major_frequency=7.586e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.414e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=13/9	total_cov=18/11
RA	417	.	NC_000913	1431922	0	T	C	bias_e_value=4087640	bias_p_value=0.880644	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.7	fisher_strand_p_value=1	frequency=2.692e-01	ks_quality_p_value=0.553082	major_base=T	major_cov=13/6	major_frequency=7.308e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.692e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=13/6	total_cov=18/10
RA	418	.	NC_000913	1431928	0	T	C	bias_e_value=392544	bias_p_value=0.0845699	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.3	fisher_strand_p_value=0.676508	frequency=2.414e-01	ks_quality_p_value=0.0245152	major_base=T	major_cov=13/9	major_frequency=7.586e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.414e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=13/9	total_cov=18/11
RA	419	.	NC_000913	1431934	0	G	T	bias_e_value=666694	bias_p_value=0.143633	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.7	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.0324332	major_base=G	major_cov=13/8	major_frequency=7.500e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.500e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=13/8	total_cov=18/10
RA	420	.	NC_000913	1431937	0	C	T	bias_e_value=1451030	bias_p_value=0.312611	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.4	fisher_strand_p_value=1	frequency=2.500e-01	ks_quality_p_value=0.0924625	major_base=C	major_cov=13/8	major_frequency=7.500e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.500e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=13/8	total_cov=18/10
RA	421	.	NC_000913	1431958	0	C	T	bias_e_value=301087	bias_p_value=0.0648664	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.4	fisher_strand_p_value=0.668339	frequency=2.500e-01	ks_quality_p_value=0.0178847	major_base=C	major_cov=12/9	major_frequency=7.500e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.500e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=12/9	total_cov=17/11
RA	422	.	NC_000913	1431961	0	C	A	bias_e_value=745295	bias_p_value=0.160567	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.6	fisher_strand_p_value=0.668339	frequency=2.500e-01	ks_quality_p_value=0.0560813	major_base=C	major_cov=12/9	major_frequency=7.500e-01	minor_base=A	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.500e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=12/9	total_cov=17/11
RA	423	.	NC_000913	1431967	0	A	G	bias_e_value=1370570	bias_p_value=0.295276	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.2	fisher_strand_p_value=0.676508	frequency=2.414e-01	ks_quality_p_value=0.12609	major_base=A	major_cov=13/9	major_frequency=7.586e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.414e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=13/9	total_cov=18/11
RA	424	.	NC_000913	1431973	0	T	C	bias_e_value=940117	bias_p_value=0.202539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.2	fisher_strand_p_value=0.676508	frequency=2.414e-01	ks_quality_p_value=0.0752714	major_base=T	major_cov=13/9	major_frequency=7.586e-01	minor_base=C	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.414e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=13/9	total_cov=18/11
RA	425	.	NC_000913	1431982	0	C	T	bias_e_value=1912770	bias_p_value=0.412089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.1	fisher_strand_p_value=0.667186	frequency=2.258e-01	ks_quality_p_value=0.207429	major_base=C	major_cov=13/11	major_frequency=7.742e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.258e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=13/11	total_cov=18/13
RA	426	.	NC_000913	1431988	0	C	T	bias_e_value=2615070	bias_p_value=0.563393	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.0	fisher_strand_p_value=0.667186	frequency=2.258e-01	ks_quality_p_value=0.340029	major_base=C	major_cov=13/11	major_frequency=7.742e-01	minor_base=T	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.258e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=13/11	total_cov=18/13
RA	427	.	NC_000913	1431995	0	A	G	bias_e_value=3083080	bias_p_value=0.664221	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.7	fisher_strand_p_value=0.4264	frequency=2.188e-01	ks_quality_p_value=0.709486	major_base=A	major_cov=13/12	major_frequency=7.812e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.188e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=13/12	total_cov=18/14
RA	428	.	NC_000913	1432000	0	A	G	bias_e_value=3909150	bias_p_value=0.84219	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.1	fisher_strand_p_value=0.667186	frequency=2.258e-01	ks_quality_p_value=0.740022	major_base=A	major_cov=13/11	major_frequency=7.742e-01	minor_base=G	minor_cov=5/2	new_cov=5/2	polymorphism_frequency=2.258e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=13/11	total_cov=18/14
RA	429	.	NC_000913	1494388	0	C	.	bias_e_value=4640960	bias_p_value=0.999852	consensus_score=86.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982833	major_base=.	major_cov=11/10	major_frequency=9.545e-01	minor_base=C	minor_cov=1/0	new_cov=11/10	polymorphism_frequency=9.545e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=12/10
RA	430	.	NC_000913	1517508	0	G	T	consensus_score=70.2	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	431	.	NC_000913	1634482	0	T	C	bias_e_value=3889390	bias_p_value=0.837932	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=1	frequency=4.615e-01	ks_quality_p_value=0.487752	major_base=T	major_cov=2/5	major_frequency=5.385e-01	minor_base=C	minor_cov=2/4	new_cov=2/4	polymorphism_frequency=4.615e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=2/5	total_cov=4/9
RA	432	.	NC_000913	1634569	0	A	T	bias_e_value=4285420	bias_p_value=0.923253	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.9	fisher_strand_p_value=1	frequency=5.455e-01	ks_quality_p_value=0.634736	major_base=T	major_cov=8/10	major_frequency=5.455e-01	minor_base=A	minor_cov=7/8	new_cov=8/10	polymorphism_frequency=5.455e-01	polymorphism_score=44.6	prediction=polymorphism	ref_cov=7/8	total_cov=15/18
RA	433	.	NC_000913	1634571	0	C	T	bias_e_value=2971210	bias_p_value=0.64012	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.3	fisher_strand_p_value=1	frequency=5.455e-01	ks_quality_p_value=0.28291	major_base=T	major_cov=8/10	major_frequency=5.455e-01	minor_base=C	minor_cov=7/8	new_cov=8/10	polymorphism_frequency=5.455e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=7/8	total_cov=15/18
RA	434	.	NC_000913	1634578	0	T	C	bias_e_value=4378490	bias_p_value=0.943304	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.2	fisher_strand_p_value=1	frequency=5.588e-01	ks_quality_p_value=0.682747	major_base=C	major_cov=9/10	major_frequency=5.588e-01	minor_base=T	minor_cov=7/8	new_cov=9/10	polymorphism_frequency=5.588e-01	polymorphism_score=40.5	prediction=polymorphism	ref_cov=7/8	total_cov=16/18
RA	435	.	NC_000913	1634597	0	C	A	bias_e_value=2523130	bias_p_value=0.543585	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.7	fisher_strand_p_value=1	frequency=5.714e-01	ks_quality_p_value=0.213769	major_base=A	major_cov=9/11	major_frequency=5.714e-01	minor_base=C	minor_cov=7/8	new_cov=9/11	polymorphism_frequency=5.714e-01	polymorphism_score=46.5	prediction=polymorphism	ref_cov=7/8	total_cov=16/19
RA	436	.	NC_000913	1634658	0	A	G	bias_e_value=2554320	bias_p_value=0.550304	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.5	fisher_strand_p_value=1	frequency=5.429e-01	ks_quality_p_value=0.218153	major_base=G	major_cov=9/10	major_frequency=5.429e-01	minor_base=A	minor_cov=8/8	new_cov=9/10	polymorphism_frequency=5.429e-01	polymorphism_score=43.8	prediction=polymorphism	ref_cov=8/8	total_cov=17/18
RA	437	.	NC_000913	1634661	0	C	G	bias_e_value=3888540	bias_p_value=0.837749	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.1	fisher_strand_p_value=1	frequency=5.588e-01	ks_quality_p_value=0.487496	major_base=G	major_cov=9/10	major_frequency=5.588e-01	minor_base=C	minor_cov=7/8	new_cov=9/10	polymorphism_frequency=5.588e-01	polymorphism_score=55.1	prediction=polymorphism	ref_cov=7/8	total_cov=17/18
RA	438	.	NC_000913	1634676	0	A	G	bias_e_value=3794670	bias_p_value=0.817526	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.6	fisher_strand_p_value=1	frequency=5.152e-01	ks_quality_p_value=0.460416	major_base=G	major_cov=8/9	major_frequency=5.152e-01	minor_base=A	minor_cov=8/8	new_cov=8/9	polymorphism_frequency=5.152e-01	polymorphism_score=43.0	prediction=polymorphism	ref_cov=8/8	total_cov=16/17
RA	439	.	NC_000913	1634699	0	A	C	bias_e_value=3658180	bias_p_value=0.788121	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.8	fisher_strand_p_value=1	frequency=5.714e-01	ks_quality_p_value=0.424373	major_base=C	major_cov=8/8	major_frequency=5.714e-01	minor_base=A	minor_cov=6/6	new_cov=8/8	polymorphism_frequency=5.714e-01	polymorphism_score=31.3	prediction=polymorphism	ref_cov=6/6	total_cov=14/14
RA	440	.	NC_000913	1634724	0	G	A	bias_e_value=3766740	bias_p_value=0.811507	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.6	fisher_strand_p_value=0.452739	frequency=5.769e-01	ks_quality_p_value=1	major_base=A	major_cov=7/8	major_frequency=5.769e-01	minor_base=G	minor_cov=7/4	new_cov=7/8	polymorphism_frequency=5.769e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=7/4	total_cov=14/12
RA	441	.	NC_000913	1634769	0	T	A	bias_e_value=3329790	bias_p_value=0.717372	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=1	frequency=5.333e-01	ks_quality_p_value=0.349938	major_base=A	major_cov=3/5	major_frequency=5.333e-01	minor_base=T	minor_cov=3/4	new_cov=3/5	polymorphism_frequency=5.333e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=3/4	total_cov=6/9
RA	442	.	NC_000913	1634778	0	T	G	bias_e_value=4608270	bias_p_value=0.992809	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.882497	major_base=T	major_cov=4/4	major_frequency=5.000e-01	minor_base=G	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=5.000e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=4/4	total_cov=7/9
RA	443	.	NC_000913	1634799	0	A	G	bias_e_value=4188600	bias_p_value=0.902394	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.0	fisher_strand_p_value=0.592075	frequency=4.615e-01	ks_quality_p_value=1	major_base=A	major_cov=5/2	major_frequency=5.385e-01	minor_base=G	minor_cov=3/3	new_cov=3/3	polymorphism_frequency=4.615e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=5/2	total_cov=8/5
RA	444	.	NC_000913	1635974	0	T	G	bias_e_value=3374410	bias_p_value=0.726985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.6	fisher_strand_p_value=0.728237	frequency=4.118e-01	ks_quality_p_value=0.493258	major_base=T	major_cov=11/9	major_frequency=5.882e-01	minor_base=G	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=4.118e-01	polymorphism_score=33.2	prediction=polymorphism	ref_cov=11/9	total_cov=20/14
RA	445	.	NC_000913	1636068	0	T	C	bias_e_value=1611490	bias_p_value=0.347181	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=0.285163	frequency=4.516e-01	ks_quality_p_value=0.376863	major_base=T	major_cov=7/10	major_frequency=5.484e-01	minor_base=C	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=4.516e-01	polymorphism_score=39.2	prediction=polymorphism	ref_cov=7/10	total_cov=16/15
RA	446	.	NC_000913	1636074	0	C	T	bias_e_value=1290980	bias_p_value=0.27813	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.2	fisher_strand_p_value=0.285163	frequency=4.516e-01	ks_quality_p_value=0.275107	major_base=C	major_cov=7/10	major_frequency=5.484e-01	minor_base=T	minor_cov=9/5	new_cov=9/5	polymorphism_frequency=4.516e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=7/10	total_cov=16/15
RA	447	.	NC_000913	1636128	0	C	T	bias_e_value=2697280	bias_p_value=0.581104	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.397214	frequency=4.286e-01	ks_quality_p_value=0.601736	major_base=C	major_cov=3/9	major_frequency=5.714e-01	minor_base=T	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=4.286e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=3/9	total_cov=7/14
RA	448	.	NC_000913	1636145	0	T	C	bias_e_value=3638160	bias_p_value=0.783806	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.1	fisher_strand_p_value=0.637186	frequency=4.706e-01	ks_quality_p_value=0.658164	major_base=T	major_cov=3/6	major_frequency=5.294e-01	minor_base=C	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=4.706e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=3/6	total_cov=7/10
RA	449	.	NC_000913	1636173	0	T	C	bias_e_value=3817370	bias_p_value=0.822416	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.6	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.466776	major_base=T	major_cov=3/5	major_frequency=5.714e-01	minor_base=C	minor_cov=2/4	new_cov=2/4	polymorphism_frequency=4.286e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=3/5	total_cov=5/9
RA	450	.	NC_000913	1636423	0	T	C	bias_e_value=4393120	bias_p_value=0.946457	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.6	fisher_strand_p_value=1	frequency=3.889e-01	ks_quality_p_value=0.691143	major_base=T	major_cov=6/5	major_frequency=6.111e-01	minor_base=C	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=3.889e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=6/5	total_cov=9/10
RA	451	.	NC_000913	1636455	0	G	A	bias_e_value=1721090	bias_p_value=0.370793	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.9	fisher_strand_p_value=0.386997	frequency=4.762e-01	ks_quality_p_value=0.30566	major_base=G	major_cov=6/5	major_frequency=5.238e-01	minor_base=A	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=4.762e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=6/5	total_cov=9/12
RA	452	.	NC_000913	1636484	0	C	T	bias_e_value=3502840	bias_p_value=0.754655	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.5	fisher_strand_p_value=0.413649	frequency=5.217e-01	ks_quality_p_value=0.936247	major_base=T	major_cov=5/7	major_frequency=5.217e-01	minor_base=C	minor_cov=7/4	new_cov=5/7	polymorphism_frequency=5.217e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=7/4	total_cov=12/11
RA	453	.	NC_000913	1636503	0	T	C	bias_e_value=3656110	bias_p_value=0.787674	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.4	fisher_strand_p_value=0.452739	frequency=5.385e-01	ks_quality_p_value=0.936193	major_base=C	major_cov=7/7	major_frequency=5.385e-01	minor_base=T	minor_cov=8/4	new_cov=7/7	polymorphism_frequency=5.385e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=8/4	total_cov=15/11
RA	454	.	NC_000913	1652331	0	T	C	consensus_score=30.7	frequency=1	major_base=C	major_cov=8/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/2
RA	455	.	NC_000913	1667887	0	C	.	consensus_score=145.4	frequency=1	major_base=.	major_cov=9/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/24
RA	456	.	NC_000913	1744751	0	C	.	consensus_score=82.7	frequency=1	major_base=.	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	457	.	NC_000913	1978243	0	G	T	consensus_score=44.7	frequency=1	major_base=T	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	458	.	NC_000913	2003264	0	C	T	consensus_score=63.5	frequency=1	major_base=T	major_cov=12/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/7
RA	459	.	NC_000913	2032423	0	G	A	consensus_score=89.4	frequency=1	major_base=A	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	460	.	NC_000913	2104837	0	G	A	consensus_score=59.2	frequency=1	major_base=A	major_cov=10/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/9
RA	461	.	NC_000913	2173363	0	C	.	consensus_score=75.4	frequency=1	major_base=.	major_cov=14/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	462	.	NC_000913	2173364	0	C	.	consensus_score=75.4	frequency=1	major_base=.	major_cov=14/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/4
RA	463	.	NC_000913	2229894	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=95.8	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=11/18	major_frequency=9.667e-01	minor_base=A	minor_cov=1/0	new_cov=11/18	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	464	.	NC_000913	2242121	0	A	G	consensus_score=101.3	frequency=1	major_base=G	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	465	.	NC_000913	2267824	0	C	T	consensus_score=88.5	frequency=1	major_base=T	major_cov=15/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	466	.	NC_000913	2272083	0	C	T	consensus_score=76.7	frequency=1	major_base=T	major_cov=14/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	467	.	NC_000913	2274557	0	A	G	consensus_score=67.6	frequency=1	major_base=G	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	468	.	NC_000913	2286238	0	C	T	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=67.3	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/8	major_frequency=9.524e-01	minor_base=G	minor_cov=0/1	new_cov=12/8	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	469	.	NC_000913	2286793	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=78.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/13	major_frequency=9.615e-01	minor_base=A	minor_cov=0/1	new_cov=12/13	polymorphism_frequency=9.615e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=12/14
RA	470	.	NC_000913	2337899	0	G	A	consensus_score=135.1	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	471	.	NC_000913	2343289	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=19.8	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/3	major_frequency=9.000e-01	minor_base=C	minor_cov=0/1	new_cov=6/3	polymorphism_frequency=9.000e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/1	total_cov=6/4
RA	472	.	NC_000913	2368016	0	C	T	consensus_score=31.7	frequency=1	major_base=T	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	473	.	NC_000913	2369820	0	C	T	consensus_score=145.6	frequency=1	major_base=T	major_cov=25/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/17
RA	474	.	NC_000913	2381273	0	C	T	consensus_score=68.7	frequency=1	major_base=T	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	475	.	NC_000913	2388510	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=41.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/7	major_frequency=9.286e-01	minor_base=C	minor_cov=0/1	new_cov=6/7	polymorphism_frequency=9.286e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/1	total_cov=6/8
RA	476	.	NC_000913	2397444	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=143.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998839	major_base=A	major_cov=21/20	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=21/20	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	477	.	NC_000913	2436027	0	C	T	consensus_score=154.6	frequency=1	major_base=T	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	478	.	NC_000913	2445454	0	C	T	bias_e_value=3145490	bias_p_value=0.677666	consensus_score=49.8	fisher_strand_p_value=0.315789	frequency=1	ks_quality_p_value=0.994169	major_base=T	major_cov=13/5	major_frequency=9.474e-01	minor_base=C	minor_cov=0/1	new_cov=13/5	polymorphism_frequency=9.474e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=13/6
RA	479	.	NC_000913	2446775	0	C	T	bias_e_value=4618290	bias_p_value=0.994967	consensus_score=125.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.901364	major_base=T	major_cov=18/21	major_frequency=9.750e-01	minor_base=C	minor_cov=0/1	new_cov=18/21	polymorphism_frequency=9.750e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=18/22
RA	480	.	NC_000913	2448413	0	C	T	consensus_score=70.5	frequency=1	major_base=T	major_cov=6/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/18
RA	481	.	NC_000913	2453265	0	C	T	consensus_score=95.7	frequency=1	major_base=T	major_cov=12/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/16
RA	482	.	NC_000913	2487809	0	C	T	consensus_score=64.1	frequency=1	major_base=T	major_cov=9/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/10
RA	483	.	NC_000913	2520359	0	A	C	consensus_score=96.1	frequency=1	major_base=C	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	484	.	NC_000913	2521000	0	C	T	consensus_score=40.7	frequency=1	major_base=T	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
RA	485	.	NC_000913	2522135	0	C	T	consensus_score=93.9	frequency=1	major_base=T	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	486	.	NC_000913	2551843	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=93.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/16	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=13/16	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	487	.	NC_000913	2555053	0	C	T	consensus_score=83.6	frequency=1	major_base=T	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	488	.	NC_000913	2555270	0	C	T	consensus_score=93.2	frequency=1	major_base=T	major_cov=22/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/8
RA	489	.	NC_000913	2589006	0	C	T	consensus_score=73.7	frequency=1	major_base=T	major_cov=12/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	490	.	NC_000913	2601372	0	C	T	consensus_score=124.7	frequency=1	major_base=T	major_cov=24/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/13
RA	491	.	NC_000913	2603648	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=140.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/25	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	492	.	NC_000913	2609197	0	C	T	bias_e_value=4641630	bias_p_value=0.999994	consensus_score=74.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996672	major_base=T	major_cov=9/15	major_frequency=9.600e-01	minor_base=G	minor_cov=0/1	new_cov=9/15	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	493	.	NC_000913	2636644	0	C	T	consensus_score=109.7	frequency=1	major_base=T	major_cov=18/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/13
RA	494	.	NC_000913	2660164	0	C	T	consensus_score=110.2	frequency=1	major_base=T	major_cov=15/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/18
RA	495	.	NC_000913	2667552	0	C	T	bias_e_value=4637310	bias_p_value=0.999064	consensus_score=126.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.957047	major_base=T	major_cov=17/23	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=17/23	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/24
RA	496	.	NC_000913	2674316	0	C	T	consensus_score=127.8	frequency=1	major_base=T	major_cov=18/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/18
RA	497	.	NC_000913	2675265	0	C	T	consensus_score=74.3	frequency=1	major_base=T	major_cov=7/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/15
RA	498	.	NC_000913	2686052	0	C	T	consensus_score=60.9	frequency=1	major_base=T	major_cov=15/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/4
RA	499	.	NC_000913	2699001	0	C	T	consensus_score=48.7	frequency=1	major_base=T	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	500	.	NC_000913	2701959	0	C	T	consensus_score=115.1	frequency=1	major_base=T	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	501	.	NC_000913	2763456	0	G	A	consensus_score=83.9	frequency=1	major_base=A	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	502	.	NC_000913	2799259	0	C	T	consensus_score=79.3	frequency=1	major_base=T	major_cov=17/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/8
RA	503	.	NC_000913	2830641	0	C	T	bias_e_value=4624940	bias_p_value=0.996401	consensus_score=96.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.916362	major_base=T	major_cov=13/20	major_frequency=9.706e-01	minor_base=G	minor_cov=0/1	new_cov=13/20	polymorphism_frequency=9.706e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/22
RA	504	.	NC_000913	2837401	0	C	T	consensus_score=103.3	frequency=1	major_base=T	major_cov=23/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/15
RA	505	.	NC_000913	2858185	0	C	T	bias_e_value=4641520	bias_p_value=0.999971	consensus_score=230.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992337	major_base=T	major_cov=30/34	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=30/34	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/35
RA	506	.	NC_000913	2864638	0	C	T	consensus_score=101.4	frequency=1	major_base=T	major_cov=13/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/17
RA	507	.	NC_000913	2880559	0	C	T	bias_e_value=4638780	bias_p_value=0.999382	consensus_score=65.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965052	major_base=T	major_cov=11/11	major_frequency=9.565e-01	minor_base=A	minor_cov=0/1	new_cov=11/11	polymorphism_frequency=9.565e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	508	.	NC_000913	2892943	0	C	T	consensus_score=130.9	frequency=1	major_base=T	major_cov=20/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/17
RA	509	.	NC_000913	2914023	0	C	T	consensus_score=85.5	frequency=1	major_base=T	major_cov=13/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/13
RA	510	.	NC_000913	2925138	0	G	A	consensus_score=73.5	frequency=1	major_base=A	major_cov=11/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/11
RA	511	.	NC_000913	3123727	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=132.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/20	major_frequency=9.744e-01	minor_base=A	minor_cov=0/1	new_cov=18/20	polymorphism_frequency=9.744e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	512	.	NC_000913	3222234	0	G	A	bias_e_value=3724930	bias_p_value=0.8025	consensus_score=45.5	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.993485	major_base=A	major_cov=10/7	major_frequency=9.444e-01	minor_base=T	minor_cov=0/1	new_cov=10/7	polymorphism_frequency=9.444e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	513	.	NC_000913	3228994	0	G	A	bias_e_value=3882440	bias_p_value=0.836436	consensus_score=107.9	fisher_strand_p_value=0.492063	frequency=1	ks_quality_p_value=0.987013	major_base=A	major_cov=16/18	major_frequency=9.444e-01	minor_base=G	minor_cov=0/2	new_cov=16/18	polymorphism_frequency=9.444e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/2	total_cov=16/21
RA	514	.	NC_000913	3257869	0	C	T	bias_e_value=3247010	bias_p_value=0.699537	consensus_score=46.4	fisher_strand_p_value=0.333333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/5	major_frequency=9.444e-01	minor_base=C	minor_cov=0/1	new_cov=12/5	polymorphism_frequency=9.444e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/1	total_cov=12/6
RA	515	.	NC_000913	3268970	0	A	G	bias_e_value=4641490	bias_p_value=0.999965	consensus_score=48.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991701	major_base=G	major_cov=8/7	major_frequency=9.375e-01	minor_base=A	minor_cov=1/0	new_cov=8/7	polymorphism_frequency=9.375e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=1/0	total_cov=9/7
RA	516	.	NC_000913	3276217	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=62.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/11	major_frequency=8.571e-01	minor_base=G	minor_cov=2/2	new_cov=13/11	polymorphism_frequency=8.571e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	517	.	NC_000913	3277851	0	C	T	bias_e_value=3352000	bias_p_value=0.722156	consensus_score=124.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.354522	major_base=T	major_cov=20/17	major_frequency=9.737e-01	minor_base=C	minor_cov=1/0	new_cov=20/17	polymorphism_frequency=9.737e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=21/17
RA	518	.	NC_000913	3325701	0	G	A	consensus_score=203.3	frequency=1	major_base=A	major_cov=34/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	519	.	NC_000913	3358472	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=182.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/26	major_frequency=9.811e-01	minor_base=C	minor_cov=0/1	new_cov=26/26	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/27
RA	520	.	NC_000913	3403891	0	G	A	consensus_score=95.5	frequency=1	major_base=A	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	521	.	NC_000913	3484496	0	G	A	bias_e_value=3798740	bias_p_value=0.818402	consensus_score=68.9	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.965052	major_base=A	major_cov=12/10	major_frequency=9.565e-01	minor_base=G	minor_cov=0/1	new_cov=12/10	polymorphism_frequency=9.565e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/1	total_cov=12/11
RA	522	.	NC_000913	3486205	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=76.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/12	major_frequency=9.615e-01	minor_base=C	minor_cov=0/1	new_cov=13/12	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=13/13
RA	523	.	NC_000913	3560455	1	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=96.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=12/14	major_frequency=9.630e-01	minor_base=T	minor_cov=0/1	new_cov=12/14	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	524	.	NC_000913	3832198	0	A	G	consensus_score=97.9	frequency=1	major_base=G	major_cov=19/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/12
RA	525	.	NC_000913	3885012	0	C	T	bias_e_value=3416890	bias_p_value=0.736136	consensus_score=105.6	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=0.982018	major_base=T	major_cov=20/11	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=20/11	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	526	.	NC_000913	3941942	0	C	T	consensus_score=25.9	frequency=1	major_base=T	major_cov=9/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/3
RA	527	.	NC_000913	3941982	0	C	T	consensus_score=36.2	frequency=1	major_base=T	major_cov=13/3	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/3	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/3
RA	528	.	NC_000913	3952440	0	C	T	consensus_score=145.9	frequency=1	major_base=T	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	529	.	NC_000913	3954014	0	C	T	consensus_score=134.9	frequency=1	major_base=T	major_cov=18/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/21
RA	530	.	NC_000913	3956719	0	C	T	consensus_score=80.9	frequency=1	major_base=T	major_cov=9/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/17
RA	531	.	NC_000913	3956756	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=89.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/17	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	532	.	NC_000913	3969001	0	C	T	consensus_score=101.6	frequency=1	major_base=T	major_cov=18/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	533	.	NC_000913	3979472	0	C	T	consensus_score=110.8	frequency=1	major_base=T	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	534	.	NC_000913	3981902	0	C	T	consensus_score=96.8	frequency=1	major_base=T	major_cov=8/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/20
RA	535	.	NC_000913	3992961	0	C	T	consensus_score=101.1	frequency=1	major_base=T	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	536	.	NC_000913	4013020	0	C	T	bias_e_value=4083090	bias_p_value=0.879664	consensus_score=88.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.551431	major_base=T	major_cov=15/12	major_frequency=9.643e-01	minor_base=C	minor_cov=1/0	new_cov=15/12	polymorphism_frequency=9.643e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=16/12
RA	537	.	NC_000913	4027233	0	T	A	bias_e_value=48513	bias_p_value=0.0104517	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.8	fisher_strand_p_value=0.00137748	frequency=4.444e-01	ks_quality_p_value=1	major_base=T	major_cov=11/4	major_frequency=5.556e-01	minor_base=A	minor_cov=1/11	new_cov=1/11	polymorphism_frequency=4.444e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=11/4	total_cov=12/15
RA	538	.	NC_000913	4045760	0	C	T	consensus_score=47.9	frequency=1	major_base=T	major_cov=4/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/11
RA	539	.	NC_000913	4063945	0	C	T	consensus_score=50.9	frequency=1	major_base=T	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	540	.	NC_000913	4070052	0	C	T	consensus_score=48.6	frequency=1	major_base=T	major_cov=5/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/11
RA	541	.	NC_000913	4084913	0	C	T	consensus_score=129.9	frequency=1	major_base=T	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	542	.	NC_000913	4093692	0	C	T	bias_e_value=3527220	bias_p_value=0.759907	consensus_score=91.3	fisher_strand_p_value=0.392857	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/17	major_frequency=9.643e-01	minor_base=C	minor_cov=1/0	new_cov=10/17	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=11/17
RA	543	.	NC_000913	4099392	0	C	T	bias_e_value=4641600	bias_p_value=0.999989	consensus_score=56.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995249	major_base=T	major_cov=8/12	major_frequency=9.524e-01	minor_base=G	minor_cov=0/1	new_cov=8/12	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	544	.	NC_000913	4108716	0	C	T	bias_e_value=3412170	bias_p_value=0.735119	consensus_score=72.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.36724	major_base=T	major_cov=13/10	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=13/10	polymorphism_frequency=9.200e-01	polymorphism_score=-0.5	prediction=consensus	ref_cov=1/1	total_cov=14/11
RA	545	.	NC_000913	4126657	0	C	T	bias_e_value=4641590	bias_p_value=0.999987	consensus_score=134.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994885	major_base=T	major_cov=20/19	major_frequency=9.750e-01	minor_base=A	minor_cov=1/0	new_cov=20/19	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	546	.	NC_000913	4138560	0	C	T	bias_e_value=2636070	bias_p_value=0.567916	consensus_score=68.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.229925	major_base=T	major_cov=19/5	major_frequency=9.600e-01	minor_base=C	minor_cov=1/0	new_cov=19/5	polymorphism_frequency=9.600e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=20/6
RA	547	.	NC_000913	4146389	1	.	T	bias_e_value=4641650	bias_p_value=1	consensus_score=151.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/31	major_frequency=9.167e-01	minor_base=.	minor_cov=1/3	new_cov=13/31	polymorphism_frequency=9.167e-01	polymorphism_score=6.5	prediction=consensus	ref_cov=1/3	total_cov=14/34
RA	548	.	NC_000913	4185676	0	C	T	consensus_score=69.0	frequency=1	major_base=T	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	549	.	NC_000913	4267582	0	G	A	consensus_score=62.9	frequency=1	major_base=A	major_cov=7/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/12
RA	550	.	NC_000913	4287391	0	G	A	consensus_score=34.0	frequency=1	major_base=A	major_cov=3/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/8
RA	551	.	NC_000913	4296268	0	T	C	bias_e_value=3112080	bias_p_value=0.670467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=20.2	fisher_strand_p_value=0.628483	frequency=3.158e-01	ks_quality_p_value=0.48973	major_base=T	major_cov=7/6	major_frequency=6.842e-01	minor_base=C	minor_cov=2/4	new_cov=2/4	polymorphism_frequency=3.158e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=7/6	total_cov=9/10
RA	552	.	NC_000913	4296380	1	.	C	consensus_score=81.0	frequency=1	major_base=C	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	553	.	NC_000913	4296380	2	.	G	consensus_score=82.0	frequency=1	major_base=G	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	554	.	NC_000913	4314691	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=116.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=19/17	major_frequency=9.730e-01	minor_base=G	minor_cov=1/0	new_cov=19/17	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=20/17
RA	555	.	NC_000913	4326289	0	G	A	bias_e_value=3341540	bias_p_value=0.719902	consensus_score=154.8	fisher_strand_p_value=0.367347	frequency=1	ks_quality_p_value=0.959189	major_base=A	major_cov=17/31	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=17/31	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=18/32
RA	556	.	NC_000913	4331783	0	G	A	bias_e_value=3545490	bias_p_value=0.763843	consensus_score=83.4	fisher_strand_p_value=0.407407	frequency=1	ks_quality_p_value=0.974685	major_base=A	major_cov=10/16	major_frequency=9.630e-01	minor_base=G	minor_cov=1/0	new_cov=10/16	polymorphism_frequency=9.630e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/0	total_cov=12/16
RA	557	.	NC_000913	4359027	0	G	A	consensus_score=67.3	frequency=1	major_base=A	major_cov=10/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/11
RA	558	.	NC_000913	4404993	0	G	A	consensus_score=106.7	frequency=1	major_base=A	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	559	.	NC_000913	4411028	0	C	T	consensus_score=56.4	frequency=1	major_base=T	major_cov=8/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/12
RA	560	.	NC_000913	4438289	0	G	A	bias_e_value=3735870	bias_p_value=0.804858	consensus_score=57.3	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/10	major_frequency=9.444e-01	minor_base=C	minor_cov=1/0	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	561	.	NC_000913	4542683	0	T	.	consensus_score=87.6	frequency=1	major_base=.	major_cov=12/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/9
RA	562	.	NC_000913	4581278	0	A	G	consensus_score=38.4	frequency=1	major_base=G	major_cov=8/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/5
RA	563	.	NC_000913	4589116	0	G	A	consensus_score=94.1	frequency=1	major_base=A	major_cov=17/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/13
RA	564	.	NC_000913	4618148	0	G	A	consensus_score=101.5	frequency=1	major_base=A	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	565	.	NC_000913	4623009	0	C	T	consensus_score=92.1	frequency=1	major_base=T	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
MC	566	.	NC_000913	257908	258683	767	0	left_inside_cov=0	left_outside_cov=22	right_inside_cov=0	right_outside_cov=22
MC	567	.	NC_000913	1196350	1203479	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=3
MC	568	.	NC_000913	1203721	1211421	0	0	left_inside_cov=1	left_outside_cov=3	right_inside_cov=2	right_outside_cov=3
MC	569	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=19	right_inside_cov=0	right_outside_cov=21
MC	570	.	NC_000913	1299499	1300697	1196	0	left_inside_cov=1	left_outside_cov=25	right_inside_cov=0	right_outside_cov=25
MC	571	.	NC_000913	1303073	1303084	0	0	left_inside_cov=0	left_outside_cov=22	right_inside_cov=0	right_outside_cov=21
MC	572	.	NC_000913	1978495	1979270	0	767	left_inside_cov=0	left_outside_cov=20	right_inside_cov=0	right_outside_cov=20
MC	573	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=0	right_outside_cov=28
MC	574	.	NC_000913	3423851	3424449	380	211	left_inside_cov=2	left_outside_cov=3	right_inside_cov=2	right_outside_cov=3
MC	575	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=32	right_inside_cov=0	right_outside_cov=30
JC	576	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=245	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=225	max_left_minus=138	max_left_plus=225	max_min_left=119	max_min_left_minus=119	max_min_left_plus=81	max_min_right=112	max_min_right_minus=112	max_min_right_plus=102	max_pos_hash_score=490	max_right=170	max_right_minus=132	max_right_plus=170	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.25	new_junction_read_count=7	polymorphism_frequency=1.000e+00	pos_hash_score=6	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=245	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=6
JC	577	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=233	max_min_left=108	max_min_left_minus=108	max_min_left_plus=103	max_min_right=112	max_min_right_minus=112	max_min_right_plus=77	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=164	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22
JC	578	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=249	max_left_minus=223	max_left_plus=249	max_min_left=110	max_min_left_minus=101	max_min_left_plus=110	max_min_right=119	max_min_right_minus=75	max_min_right_plus=119	max_pos_hash_score=490	max_right=240	max_right_minus=240	max_right_plus=203	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=32
JC	579	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=14	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=237	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=235	max_left_minus=192	max_left_plus=235	max_min_left=113	max_min_left_minus=113	max_min_left_plus=64	max_min_right=121	max_min_right_minus=121	max_min_right_plus=103	max_pos_hash_score=474	max_right=241	max_right_minus=224	max_right_plus=241	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.82	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	580	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=232	max_min_left=101	max_min_left_minus=101	max_min_left_plus=52	max_min_right=121	max_min_right_minus=97	max_min_right_plus=121	max_pos_hash_score=490	max_right=234	max_right_minus=234	max_right_plus=206	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.80	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	581	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=20	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=248	max_left_minus=247	max_left_plus=248	max_min_left=106	max_min_left_minus=101	max_min_left_plus=106	max_min_right=111	max_min_right_minus=94	max_min_right_plus=111	max_pos_hash_score=488	max_right=248	max_right_minus=248	max_right_plus=245	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.56	new_junction_read_count=43	polymorphism_frequency=1.000e+00	pos_hash_score=42	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	582	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=245	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=236	max_left_minus=236	max_left_plus=234	max_min_left=105	max_min_left_minus=93	max_min_left_plus=105	max_min_right=93	max_min_right_minus=93	max_min_right_plus=75	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=233	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.94	new_junction_read_count=26	polymorphism_frequency=NA	pos_hash_score=24	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	583	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=247	max_left_minus=118	max_left_plus=247	max_min_left=120	max_min_left_minus=118	max_min_left_plus=120	max_min_right=108	max_min_right_minus=0	max_min_right_plus=108	max_pos_hash_score=488	max_right=221	max_right_minus=132	max_right_plus=221	neg_log10_pos_hash_p_value=1.3	new_junction_coverage=0.36	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	584	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=14	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=243	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=238	max_left_minus=238	max_left_plus=214	max_min_left=109	max_min_left_minus=72	max_min_left_plus=109	max_min_right=122	max_min_right_minus=122	max_min_right_plus=100	max_pos_hash_score=486	max_right=238	max_right_minus=220	max_right_plus=238	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=26	polymorphism_frequency=NA	pos_hash_score=22	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	585	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.089e-01	junction_possible_overlap_registers=243	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=218	max_left_minus=201	max_left_plus=218	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=97	max_min_right_minus=40	max_min_right_plus=97	max_pos_hash_score=486	max_right=97	max_right_minus=40	max_right_plus=97	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.44	new_junction_read_count=12	polymorphism_frequency=3.089e-01	pos_hash_score=6	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=2	side_1_possible_overlap_registers=245	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=7
JC	586	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=242	max_left_minus=242	max_left_plus=211	max_min_left=123	max_min_left_minus=80	max_min_left_plus=123	max_min_right=96	max_min_right_minus=96	max_min_right_plus=90	max_pos_hash_score=490	max_right=245	max_right_minus=245	max_right_plus=215	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.58	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	587	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=233	max_left_minus=163	max_left_plus=233	max_min_left=123	max_min_left_minus=123	max_min_left_plus=100	max_min_right=121	max_min_right_minus=121	max_min_right_plus=104	max_pos_hash_score=488	max_right=245	max_right_minus=245	max_right_plus=223	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.73	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	588	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=235	max_left_minus=201	max_left_plus=235	max_min_left=125	max_min_left_minus=125	max_min_left_plus=119	max_min_right=100	max_min_right_minus=63	max_min_right_plus=100	max_pos_hash_score=490	max_right=241	max_right_minus=241	max_right_plus=218	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.54	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	589	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=6	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=235	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=227	max_left_minus=207	max_left_plus=227	max_min_left=112	max_min_left_minus=46	max_min_left_plus=112	max_min_right=111	max_min_right_minus=86	max_min_right_plus=111	max_pos_hash_score=470	max_right=237	max_right_minus=221	max_right_plus=237	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	590	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=11	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=227	max_left_minus=227	max_left_plus=223	max_min_left=116	max_min_left_minus=116	max_min_left_plus=114	max_min_right=110	max_min_right_minus=107	max_min_right_plus=110	max_pos_hash_score=482	max_right=241	max_right_minus=241	max_right_plus=235	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=24	polymorphism_frequency=9.799e-01	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=4	side_1_possible_overlap_registers=245	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	591	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=211	max_left_minus=193	max_left_plus=211	max_min_left=113	max_min_left_minus=102	max_min_left_plus=113	max_min_right=122	max_min_right_minus=122	max_min_right_plus=119	max_pos_hash_score=488	max_right=240	max_right_minus=240	max_right_plus=213	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.76	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	592	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=246	max_left_minus=183	max_left_plus=246	max_min_left=123	max_min_left_minus=69	max_min_left_plus=123	max_min_right=119	max_min_right_minus=102	max_min_right_plus=119	max_pos_hash_score=490	max_right=214	max_right_minus=182	max_right_plus=214	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.72	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=245	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20
JC	593	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=16	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=236	max_left_minus=236	max_left_plus=214	max_min_left=120	max_min_left_minus=120	max_min_left_plus=106	max_min_right=110	max_min_right_minus=110	max_min_right_plus=69	max_pos_hash_score=486	max_right=247	max_right_minus=247	max_right_plus=246	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.84	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	594	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=239	max_left_minus=236	max_left_plus=239	max_min_left=121	max_min_left_minus=59	max_min_left_plus=121	max_min_right=104	max_min_right_minus=61	max_min_right_plus=104	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=207	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.76	new_junction_read_count=21	polymorphism_frequency=9.536e-01	pos_hash_score=19	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=21
JC	595	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=247	max_left_minus=236	max_left_plus=247	max_min_left=122	max_min_left_minus=116	max_min_left_plus=122	max_min_right=114	max_min_right_minus=114	max_min_right_plus=114	max_pos_hash_score=488	max_right=240	max_right_minus=222	max_right_plus=240	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.87	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	596	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=242	max_left_minus=242	max_left_plus=239	max_min_left=124	max_min_left_minus=0	max_min_left_plus=124	max_min_right=117	max_min_right_minus=89	max_min_right_plus=117	max_pos_hash_score=490	max_right=224	max_right_minus=89	max_right_plus=224	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.90	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	597	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=249	max_left_minus=249	max_left_plus=194	max_min_left=117	max_min_left_minus=117	max_min_left_plus=92	max_min_right=93	max_min_right_minus=93	max_min_right_plus=93	max_pos_hash_score=490	max_right=248	max_right_minus=241	max_right_plus=248	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	598	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=246	max_left_minus=242	max_left_plus=246	max_min_left=123	max_min_left_minus=123	max_min_left_plus=98	max_min_right=115	max_min_right_minus=112	max_min_right_plus=115	max_pos_hash_score=490	max_right=231	max_right_minus=218	max_right_plus=231	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.98	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	599	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=249	max_left_minus=219	max_left_plus=249	max_min_left=99	max_min_left_minus=99	max_min_left_plus=56	max_min_right=122	max_min_right_minus=122	max_min_right_plus=112	max_pos_hash_score=488	max_right=229	max_right_minus=209	max_right_plus=229	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.73	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	600	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=201	max_left_minus=194	max_left_plus=201	max_min_left=121	max_min_left_minus=121	max_min_left_plus=112	max_min_right=117	max_min_right_minus=117	max_min_right_plus=50	max_pos_hash_score=490	max_right=237	max_right_minus=237	max_right_plus=233	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.65	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=241	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	601	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=232	max_left_minus=232	max_left_plus=151	max_min_left=114	max_min_left_minus=94	max_min_left_plus=114	max_min_right=110	max_min_right_minus=87	max_min_right_plus=110	max_pos_hash_score=488	max_right=224	max_right_minus=204	max_right_plus=224	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.73	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=20	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=20
JC	602	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=238	max_left_minus=132	max_left_plus=238	max_min_left=110	max_min_left_minus=110	max_min_left_plus=0	max_min_right=121	max_min_right_minus=121	max_min_right_plus=43	max_pos_hash_score=490	max_right=250	max_right_minus=250	max_right_plus=43	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.47	new_junction_read_count=13	polymorphism_frequency=9.275e-01	pos_hash_score=11	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=241	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=12
JC	603	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=249	max_left_minus=249	max_left_plus=210	max_min_left=114	max_min_left_minus=114	max_min_left_plus=102	max_min_right=122	max_min_right_minus=63	max_min_right_plus=122	max_pos_hash_score=490	max_right=241	max_right_minus=241	max_right_plus=193	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	604	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=17	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=237	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=203	max_min_left=120	max_min_left_minus=97	max_min_left_plus=120	max_min_right=120	max_min_right_minus=116	max_min_right_plus=120	max_pos_hash_score=474	max_right=235	max_right_minus=200	max_right_plus=235	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=28
JC	605	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=232	max_left_minus=187	max_left_plus=232	max_min_left=119	max_min_left_minus=119	max_min_left_plus=117	max_min_right=103	max_min_right_minus=93	max_min_right_plus=103	max_pos_hash_score=488	max_right=249	max_right_minus=249	max_right_plus=233	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	606	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=19	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=236	max_left_minus=236	max_left_plus=235	max_min_left=113	max_min_left_minus=113	max_min_left_plus=113	max_min_right=108	max_min_right_minus=108	max_min_right_plus=75	max_pos_hash_score=486	max_right=248	max_right_minus=244	max_right_plus=248	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=245	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=30
JC	607	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=246	max_left_minus=234	max_left_plus=246	max_min_left=109	max_min_left_minus=109	max_min_left_plus=73	max_min_right=124	max_min_right_minus=112	max_min_right_plus=124	max_pos_hash_score=490	max_right=245	max_right_minus=245	max_right_plus=228	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	608	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=241	max_left_minus=241	max_left_plus=238	max_min_left=123	max_min_left_minus=105	max_min_left_plus=123	max_min_right=112	max_min_right_minus=112	max_min_right_plus=100	max_pos_hash_score=488	max_right=244	max_right_minus=234	max_right_plus=244	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	609	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=21	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=238	max_left_minus=238	max_left_plus=236	max_min_left=123	max_min_left_minus=105	max_min_left_plus=123	max_min_right=122	max_min_right_minus=108	max_min_right_plus=122	max_pos_hash_score=488	max_right=238	max_right_minus=238	max_right_plus=235	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.45	new_junction_read_count=40	polymorphism_frequency=9.751e-01	pos_hash_score=39	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=40
JC	610	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=246	max_left_minus=246	max_left_plus=236	max_min_left=103	max_min_left_minus=91	max_min_left_plus=103	max_min_right=122	max_min_right_minus=113	max_min_right_plus=122	max_pos_hash_score=490	max_right=245	max_right_minus=245	max_right_plus=229	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.41	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	611	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=245	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=232	max_left_minus=220	max_left_plus=232	max_min_left=122	max_min_left_minus=122	max_min_left_plus=103	max_min_right=114	max_min_right_minus=114	max_min_right_plus=58	max_pos_hash_score=490	max_right=249	max_right_minus=249	max_right_plus=248	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=34
UN	612	.	NC_000913	15478	15478
UN	613	.	NC_000913	15480	15480
UN	614	.	NC_000913	15485	15485
UN	615	.	NC_000913	15488	15488
UN	616	.	NC_000913	15490	15497
UN	617	.	NC_000913	15499	16523
UN	618	.	NC_000913	16525	16525
UN	619	.	NC_000913	16527	16541
UN	620	.	NC_000913	16543	16543
UN	621	.	NC_000913	16548	16548
UN	622	.	NC_000913	16551	16551
UN	623	.	NC_000913	16565	16565
UN	624	.	NC_000913	16572	16572
UN	625	.	NC_000913	16575	16575
UN	626	.	NC_000913	20005	20005
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UN	628	.	NC_000913	20010	20011
UN	629	.	NC_000913	20018	20019
UN	630	.	NC_000913	20021	20377
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UN	641	.	NC_000913	224571	224571
UN	642	.	NC_000913	224574	224576
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UN	646	.	NC_000913	225417	225418
UN	647	.	NC_000913	227181	227181
UN	648	.	NC_000913	227187	227187
UN	649	.	NC_000913	227200	228524
UN	650	.	NC_000913	228526	228526
UN	651	.	NC_000913	228528	228529
UN	652	.	NC_000913	228531	228532
UN	653	.	NC_000913	228534	228534
UN	654	.	NC_000913	228537	228538
UN	655	.	NC_000913	228544	228544
UN	656	.	NC_000913	228546	228547
UN	657	.	NC_000913	257908	258683
UN	658	.	NC_000913	270740	270740
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UN	660	.	NC_000913	270748	270748
UN	661	.	NC_000913	270751	270755
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UN	664	.	NC_000913	275070	275076
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UN	694	.	NC_000913	291224	291224
UN	695	.	NC_000913	291228	291232
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UN	699	.	NC_000913	315414	316280
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UN	703	.	NC_000913	357864	357864
UN	704	.	NC_000913	357868	357869
UN	705	.	NC_000913	357872	357873
UN	706	.	NC_000913	357875	357875
UN	707	.	NC_000913	357880	357880
UN	708	.	NC_000913	357886	357887
UN	709	.	NC_000913	357890	357890
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UN	712	.	NC_000913	381449	381449
UN	713	.	NC_000913	381462	382413
UN	714	.	NC_000913	382415	382423
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UN	717	.	NC_000913	391888	391894
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UN	719	.	NC_000913	391899	391902
UN	720	.	NC_000913	391904	392785
UN	721	.	NC_000913	392796	392796
UN	722	.	NC_000913	392809	392809
UN	723	.	NC_000913	394727	394727
UN	724	.	NC_000913	394736	394736
UN	725	.	NC_000913	394747	394756
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UN	728	.	NC_000913	394769	394770
UN	729	.	NC_000913	394772	394772
UN	730	.	NC_000913	394781	394781
UN	731	.	NC_000913	445499	445499
UN	732	.	NC_000913	445504	445504
UN	733	.	NC_000913	445516	445516
UN	734	.	NC_000913	445519	445519
UN	735	.	NC_000913	445526	445526
UN	736	.	NC_000913	445548	445548
UN	737	.	NC_000913	505470	505470
UN	738	.	NC_000913	505476	505476
UN	739	.	NC_000913	505491	505491
UN	740	.	NC_000913	526090	526510
UN	741	.	NC_000913	538401	538401
UN	742	.	NC_000913	538408	538408
UN	743	.	NC_000913	538426	538426
UN	744	.	NC_000913	539045	539046
UN	745	.	NC_000913	539052	539052
UN	746	.	NC_000913	566565	566565
UN	747	.	NC_000913	566988	567876
UN	748	.	NC_000913	567883	567883
UN	749	.	NC_000913	568951	568951
UN	750	.	NC_000913	568953	568955
UN	751	.	NC_000913	569026	569026
UN	752	.	NC_000913	569038	569039
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UN	756	.	NC_000913	569169	569169
UN	757	.	NC_000913	569171	569171
UN	758	.	NC_000913	569191	569191
UN	759	.	NC_000913	569219	569219
UN	760	.	NC_000913	569240	569247
UN	761	.	NC_000913	569249	569249
UN	762	.	NC_000913	572371	572371
UN	763	.	NC_000913	572373	572373
UN	764	.	NC_000913	572381	572381
UN	765	.	NC_000913	574741	574741
UN	766	.	NC_000913	574758	574758
UN	767	.	NC_000913	574763	574783
UN	768	.	NC_000913	574785	575577
UN	769	.	NC_000913	575581	575582
UN	770	.	NC_000913	575584	575588
UN	771	.	NC_000913	575591	575592
UN	772	.	NC_000913	578729	578729
UN	773	.	NC_000913	578809	578809
UN	774	.	NC_000913	578811	578811
UN	775	.	NC_000913	579004	579004
UN	776	.	NC_000913	579127	579127
UN	777	.	NC_000913	579134	579134
UN	778	.	NC_000913	579146	579146
UN	779	.	NC_000913	579271	579271
UN	780	.	NC_000913	579285	579285
UN	781	.	NC_000913	579385	579385
UN	782	.	NC_000913	579457	579457
UN	783	.	NC_000913	579502	579502
UN	784	.	NC_000913	579717	579717
UN	785	.	NC_000913	579811	579811
UN	786	.	NC_000913	580302	580302
UN	787	.	NC_000913	580437	580437
UN	788	.	NC_000913	581042	581042
UN	789	.	NC_000913	581056	581056
UN	790	.	NC_000913	581073	581073
UN	791	.	NC_000913	581118	581118
UN	792	.	NC_000913	581127	581127
UN	793	.	NC_000913	581133	581133
UN	794	.	NC_000913	581227	581227
UN	795	.	NC_000913	583398	583466
UN	796	.	NC_000913	583468	583503
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