Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 500,959 G→A D279N (GAT→AAT)  gsk → inosine/guanosine kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913500,9590GA100.0% 121.5 / NA 36D279N (GAT→AAT) gskinosine/guanosine kinase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (15/21);  total (15/21)

GCGTTGCAAGCCGGGTGAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAGATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTGTATATTCGCACATTGCGCCGTACATGGGCGGGCCGGAAAAAATCATGAACACTAATGGAGCGGGGGAT  >  NC_000913/500715‑501198
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                
gCGTTGCAAGCCGGGTGAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTgg                                                                                                                                                                                                                                            <  2:110402/251‑1 (MQ=255)
          ccGGGTGAACCCATGCCGGAAGCACCCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCAc                                                                                                                                                                                                                                  <  1:147828/251‑1 (MQ=255)
          ccGGGTGAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCAc                                                                                                                                                                                                                                  <  1:120217/251‑1 (MQ=255)
            gggTGAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCAccg                                                                                                                                                                                                                                <  1:236797/251‑1 (MQ=255)
            gggTGAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCAccg                                                                                                                                                                                                                                >  1:109141/1‑251 (MQ=255)
                gAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCgg                                                                                                                                                                                                                            >  2:162881/1‑251 (MQ=255)
                        gCNGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGGGCTTTGCACCGCCGGGCCAATc                                                                                                                                                                                                                     <  2:252175/250‑1 (MQ=255)
                         ccGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCgg                                                                                                                                                                                                                   >  1:5928/1‑251 (MQ=255)
                          cGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGc                                                                                                                                                                                                                  >  1:129499/1‑251 (MQ=255)
                                       gAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCgg                                                                                                                                                                                                     <  2:209777/251‑1 (MQ=255)
                                           gCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCtt                                                                                                                                                                                                 <  1:237207/251‑1 (MQ=255)
                                                     aCGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGAc                                                                                                                                                                                       <  2:20193/251‑1 (MQ=255)
                                                        cgAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGaa                                                                                                                                                                                    <  1:92060/251‑1 (MQ=255)
                                                               atatAACGTTCCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATGGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGGCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAAc                                                                                                                                                                             <  1:45950/251‑1 (MQ=255)
                                                                              ggtgCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGTCTTTACCGAAAACGAAGCGAAACGGAAAACCCAGCaac                                                                                                                                                              >  1:177747/1‑249 (MQ=255)
                                                                                        cTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGcc                                                                                                                                                    >  1:135100/1‑251 (MQ=255)
                                                                                                   gTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTAcc                                                                                                                                                                                             <  1:31339/199‑1 (MQ=255)
                                                                                                   gTTTGTCATTGCCGAGAATCCGCAGTGGCGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCttttcc                                                                                                                                                                                             >  2:31339/1‑196 (MQ=255)
                                                                                                            tGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTc                                                                                                                                 <  1:85223/250‑1 (MQ=255)
                                                                                                             gCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCa                                                                                                                               <  1:94557/250‑1 (MQ=255)
                                                                                                                        gCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAgg                                                                                                                   >  1:206289/1‑250 (MQ=255)
                                                                                                                             ggtggCCGCAATTCCTCAAAGATCACGTTTCGATCCTTGCGAGGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAGAGCGATCCGTTGTTGGCATCGGACAAGGCGCTGGACTGGTTAAATCTGGTGCTGTGCACCGCCGTGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTTTGAGTTTAg                                                                                                               <  2:198731/250‑1 (MQ=255)
                                                                                                                                   agcaATTCCTCAAAGATCACGTCTATATCCTTGCGATGACCGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGACGGGCCAATCGGCTTGTATGTGGCGGGCTTTACCGAAGACGAAGCGGAACGTAACAACCAGCATCCGCTGCTGCCGGGCGCCCTCGCGGAATTCAACCAGTATGGGTTAAGCCGCGcc                                                                                                        >  2:270928/1‑251 (MQ=255)
                                                                                                                                                   tCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTAt                                                                                                                       <  2:74471/220‑1 (MQ=255)
                                                                                                                                                   tCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTAt                                                                                                                       >  1:74471/1‑220 (MQ=255)
                                                                                                                                                                     gATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCgtg                                                                      <  2:5928/251‑1 (MQ=255)
                                                                                                                                                                           cGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGGTATAGCGGAATTCAACCAGTATGAGTTTAACCGCGCCATGCGCCACAAGGGTTGCCAGAATCCGCTGCGGGTATAtt                                                                >  1:56453/1‑251 (MQ=255)
                                                                                                                                                                                  gAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCGGACAAGGCGCTTGACTGGGTAAATCTGGTGCTGTGCACAGCCGGGCCAATCGGCTTGTATAGGGCGGTCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTTCGTGTATATTCGCACAt                                                         <  2:189709/251‑1 (MQ=255)
                                                                                                                                                                                                gACCGGAGAAAGCGTTCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTGTATATTCGCACATTGCGCCGTACATgg                                           <  2:250463/251‑1 (MQ=255)
                                                                                                                                                                                                gACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTGTATATTCGCACATTGCGCCGTACATg                                            <  2:28281/250‑1 (MQ=255)
                                                                                                                                                                                                      agaAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGATGCTGCCCGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGGCAGAATACGCTGCGGGTATATTCGCACATTACGCCGTACATgggcgggc                                     >  2:116572/1‑251 (MQ=255)
                                                                                                                                                                                                                ccGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTGTATATTCGCACATTGCGCCGTACATGGGCGGGCCGGAAAAAAt                           >  1:276927/1‑251 (MQ=255)
                                                                                                                                                                                                                              tGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGAtt                                                                                        <  1:147723/176‑1 (MQ=255)
                                                                                                                                                                                                                              tGACAAGGCGCTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAAAGTAAAACCCCGCCTCCGCTGCTGCCGGGCGCTATAGCGGCATTCCAACCGAATAAGGTTAGCCCCGCCAGGCGCCACAAgggtt                                                                                        >  2:147723/1‑173 (MQ=255)
                                                                                                                                                                                                                                        cTGGACTGGGTAAATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTGTATATTCGCACATTGCGCCGTACATGGGCGGGCCGGAAAAAATCATGAACACTAATGGAGCggggg    >  1:208285/1‑250 (MQ=255)
                                                                                                                                                                                                                                          ggACTGGGTAAATCTGGGGCTGTTCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCTCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTTTATATTCGCACATTGCGCCGTACATGGGCGGGCCGGAAAAAATCATGAACACTAATGGTGCGGGGGAt  <  2:129499/250‑1 (MQ=255)
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                
GCGTTGCAAGCCGGGTGAACCCATGCCGGAAGCAACCATGAAAGCCATTGAGTACGCGAAGAAATATAACGTACCGGTGGTGCTGACGCTGGGCACCAAGTTTGTCATTGCCGAGAATCCGCAGTGGTGGCAGCAATTCCTCAAAGATCACGTCTCTATCCTTGCGATGAACGAAGATGAAGCCGAAGCGTTGACCGGAGAAAGCGATCCGTTGTTGGCATCTGACAAGGCGCTGGACTGGGTAGATCTGGTGCTGTGCACCGCCGGGCCAATCGGCTTGTATATGGCGGGCTTTACCGAAGACGAAGCGAAACGTAAAACCCAGCATCCGCTGCTGCCGGGCGCTATAGCGGAATTCAACCAGTATGAGTTTAGCCGCGCCATGCGCCACAAGGATTGCCAGAATCCGCTGCGTGTATATTCGCACATTGCGCCGTACATGGGCGGGCCGGAAAAAATCATGAACACTAATGGAGCGGGGGAT  >  NC_000913/500715‑501198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: