mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,645 | G→A | W282* (TGG→TAG) | thrB → | homoserine kinase |
| RA | 71,170 | T→C | S262P (TCG→CCG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 81,044 | C→T | L305L (CTG→CTA) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 81,102 | G→A | S286L (TCG→TTG) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 85,203 | C→T | P279L (CCG→CTG) | leuO → | DNA‑binding transcriptional dual regulator LeuO |
| RA | 154,182 | C→T | L415L (CTG→CTA) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 156,068 | A→G | V45A (GTA→GCA) | yadV ← | putative fimbrial chaperone YadV |
| JC JC | 168,803 | IS1 (+) +9 bp | coding (1320‑1328/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 223,560 | T→A | intergenic (+152/‑211) | gmhB → / → rrsH | D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase/16S ribosomal RNA |
| RA | 246,985 | C→T | P92S (CCG→TCG) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 292,019 | C→T | L174L (CTA→TTA) | yagJ → | protein YagJ |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| JC JC | 362,204 | IS1 (–) +9 bp | coding (968‑976/1254 nt) | lacY ← | lactose permease |
| RA | 410,666 | C→T | P175S (CCT→TCT) | mak → | fructokinase |
| RA | 421,027 | C→T | R14R (CGC→CGT) | proY → | putative transporter ProY |
| RA | 456,711 | C→G | P12R (CCC→CGC) | clpP → | ATP‑dependent Clp protease proteolytic subunit |
| RA | 472,849 | A→G | G84G (GGA→GGG) | glnK → | nitrogen regulatory protein PII‑2 |
| RA | 495,622 | C→T | T168I (ACC→ATC) | htpG → | chaperone protein HtpG |
| RA | 534,742 | G→A | G276D (GGT→GAT) | gcl → | glyoxylate carboligase |
| RA | 547,891 | C→T | L404L (CTC→CTT) | fdrA → | putative oxamate carbamoyltransferase FdrA |
| MC JC | 575,786 | Δ3,398 bp | IS5‑mediated | [nmpC]–borD | [nmpC], essD, rrrD, rzpD, rzoD, borD |
| RA | 582,597 | C→T | intergenic (+500/‑278) | tfaD → / → tfaX | putative tail fiber assembly protein TfaD/protein TfaX |
| RA | 694,941 | G→A | L5L (CTC→CTT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 780,624 | C→T | noncoding (71/76 nt) | lysT → | tRNA‑Lys |
| RA | 789,580 | C→A | E134* (GAA→TAA) | galK ← | galactokinase |
| RA | 790,832 | Δ1 bp | coding (198/1047 nt) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 822,527 | C→T | E405K (GAA→AAA) | clsB ← | cardiolipin synthase B |
| RA | 883,396 | C→T | intergenic (‑8/‑277) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 884,892 | C→T | S407F (TCT→TTT) | mdfA → | multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 905,283 | G→T | G124V (GGC→GTC) | amiD → | N‑acetylmuramoyl‑L‑alanine amidase D |
| RA | 908,169 | C→T | R38R (AGG→AGA) | ybjT ← | putative NAD(P)‑binding protein YbjT |
| RA | 909,990 | C→T | E354K (GAG→AAG) | poxB ← | pyruvate oxidase |
| RA | 922,954 | G→T | A14A (GCG→GCT) | clpS → | specificity factor for ClpA‑ClpP chaperone‑protease complex |
| RA | 1,085,420 | T→A | S143R (AGT→AGA) | phoH → | ATP‑binding protein PhoH |
| JC JC | 1,085,983 | IS1 (+) +8 bp | coding (992‑999/1065 nt) | phoH → | ATP‑binding protein PhoH |
| RA | 1,123,823 | 2 bp→AG | coding (231‑232/648 nt) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,147,792 | T→A | S58T (TCG→ACG) | plsX → | putative phosphate acyltransferase |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,194,922 | G→A | T10T (ACC→ACT) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,308,684 | T→C | intergenic (‑39/‑104) | clsA ← / → yciY | cardiolipin synthase A/uncharacterized protein YciY |
| RA | 1,331,059 | 2 bp→AT | coding (12‑13/2598 nt) | topA → | DNA topoisomerase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,405,758 | G→A | intergenic (‑7/‑221) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| RA | 1,428,150 | G→A | L193L (CTG→TTG) | insH5 ← | IS5 family transposase and trans‑activator |
| RA | 1,489,491 | G→A | L420L (CTG→CTA) | aldA → | aldehyde dehydrogenase A |
| RA | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| RA | 1,629,247 | C→T | I11I (ATC→ATT) | ydfZ → | putative selenoprotein YdfZ |
| JC JC | 1,641,158 | IS1 (–) +8 bp | intergenic (+183/+174) | ynfU → / ← cspB | putative zinc‑binding protein YnfU/cold shock‑like protein CspB |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,667,460 | G→A | Q369* (CAG→TAG) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,748,841 | C→T | R240K (AGA→AAA) | ydhT ← | uncharacterized protein YdhT |
| RA | 1,751,024 | C→A | intergenic (‑11/+53) | ydhX ← / ← ydhW | putative 4Fe‑4S ferredoxin‑like protein YdhX/uncharacterized protein YdhW |
| RA | 1,848,300 | 2 bp→TT | coding (376‑377/552 nt) | ydjA ← | putative oxidoreductase YdjA |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,962,172 | C→T | A67A (GCC→GCT) | yecT → | protein YecT |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,002,087 | C→T | noncoding (20/195 nt) | fliX ← | small RNA FliX |
| RA | 2,003,219 | T→G | T130P (ACC→CCC) | fliC ← | flagellar filament structural protein |
| RA | 2,008,395 | C→T | A40V (GCT→GTT) | yedE → | putative selenium transporter YedE |
| RA | 2,010,068 | C→T | T83I (ACC→ATC) | yedK → | genome maintenance protein |
| RA | 2,023,559 | A→G | T223A (ACT→GCT) | fliR → | flagellar biosynthesis protein FliR |
| RA | 2,027,332 | T→A | E229V (GAA→GTA) | dgcQ ← | diguanylate cyclase DgcQ |
| RA | 2,029,550 | C→T | R4R (CGC→CGT) | yedA → | putative transporter YedA |
| RA | 2,031,160 | C→T | E386E (GAG→GAA) | dcm ← | DNA‑cytosine methyltransferase |
| RA | 2,032,183 | C→T | W45* (TGG→TGA) | dcm ← | DNA‑cytosine methyltransferase |
| RA | 2,033,648 | C→T | intergenic (‑227/‑1) | drpB ← / → rseX | cell division protein DrpB/small regulatory RNA RseX |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,041,278 | G→A | intergenic (+160/‑97) | msrQ → / → zinT | membrane‑bound flavocytochrome MsrQ/metal‑binding protein ZinT |
| RA | 2,046,403 | C→T | A489V (GCT→GTT) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| JC JC | 2,094,553 | IS1 (+) +9 bp | coding (19‑27/591 nt) | hisH → | imidazole glycerol phosphate synthase subunit HisH |
| RA | 2,104,024 | G→T | I162I (ATC→ATA) | wbbK ← | putative glycosyltransferase WbbK |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,142,598 | G→A | L117L (CTC→CTT) | udk ← | uridine/cytidine kinase |
| JC JC | 2,168,341 | IS5 (–) +4 bp | intergenic (‑35/‑368) | yegR ← / → yegS | uncharacterized protein YegR/lipid kinase YegS |
| MC JC | 2,171,429 | Δ5,958 bp | IS3‑mediated | [gatR]–gatY | [gatR], gatD, gatB, gatA, gatZ, gatY |
| RA | 2,233,609 | C→T | Q4* (CAG→TAG) | yeiS → | DUF2542 domain‑containing protein YeiS |
| RA | 2,242,247 | C→T | G241R (GGG→AGG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,247,134 | A→C | Y467D (TAC→GAC) | lysP ← | lysine:H(+) symporter |
| RA | 2,281,855 | T→C | G408G (GGT→GGC) | radD → | putative DNA repair helicase RadD |
| RA | 2,281,954 | C→A | N441K (AAC→AAA) | radD → | putative DNA repair helicase RadD |
| RA | 2,404,402 | G→A | S71L (TCG→TTG) | nuoB ← | NADH:quinone oxidoreductase subunit B |
| RA | 2,556,984 | G→A | T105I (ACC→ATC) | eutC ← | ethanolamine ammonia‑lyase subunit beta |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,609,473 | G→A | L329L (CTG→CTA) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,774,947 | G→A | G544S (GGT→AGT) | yfjW → | uncharacterized protein YfjW |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,880,635 | T→C | L138L (TTA→TTG) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,070,858 | T→G | K129N (AAA→AAC) | fbaA ← | fructose‑bisphosphate aldolase class II |
| RA | 3,087,508 | C→T | P268L (CCA→CTA) | metK → | methionine adenosyltransferase |
| RA | 3,167,148 | G→A | H191Y (CAT→TAT) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,279,276 | C→G | F121L (TTC→TTG) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,296,481 | G→A | V25M (GTG→ATG) | dolP → | division and outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| RA | 3,465,502 | G→A | E141K (GAG→AAG) | gspM → | Type II secretion system protein GspM |
| RA | 3,474,424 | T→G | K43N (AAA→AAC) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,511,466 | C→T | V293V (GTG→GTA) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,524,913 | C→T | F681F (TTC→TTT) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,555,047 | 2 bp→TG | coding (1963‑1964/2706 nt) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,581,222 | A→G | N29D (AAC→GAC) | yhhY → | N‑acetyltransferase YhhY |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,685,480 | C→T | E47K (GAA→AAA) | pdeK ← | c‑di‑GMP phosphodiesterase PdeK |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,440 | 2 bp→TT | noncoding (105‑106/160 nt) | xylZ ← | small RNA XylZ |
| RA | 3,730,560 | C→T | W69* (TGG→TAG) | xylA ← | xylose isomerase |
| RA | 3,770,539 | C→T | V281M (GTG→ATG) | yibH ← | inner membrane protein YibH |
| RA | 3,773,173 | Δ1 bp | coding (893/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,176 | C→T | S299F (TCT→TTT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| JC JC | 4,044,847 | IS5 (+) +4 bp | coding (649‑652/1431 nt) | yihF → | DUF945 domain‑containing protein YihF |
| JC JC | 4,124,494 | IS2 (+) +5 bp | intergenic (‑38/+114) | cytR ← / ← priA | DNA‑binding transcriptional repressor CytR/primosomal protein N' |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,322,288 | A→G | F45F (TTT→TTC) | phnF ← | putative transcriptional regulator PhnF |
| RA | 4,325,000 | C→T | G56S (GGC→AGC) | phnC ← | phosphonate/phosphate ABC transporter ATP binding subunit |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,437,890 | C→T | Q62* (CAG→TAG) | ytfI → | protein YtfI |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,476,605 | G→A | S390N (AGC→AAC) | yjgL → | protein YjgL |
| RA | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196364 | 1211475 | 15112 | 2 [1] | [1] 2 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1579803 | 1579852 | 50 | 2 [1] | [1] 2 | ydeM | putative anaerobic sulfatase maturation enzyme YdeM |
| * | * | ÷ | NC_000913 | 2558699 | 2565482 | 6784 | 42 [1] | [1] 5 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| * | * | ÷ | NC_000913 | 3423900–3424231 | 3424424–3424238 | 8–525 | 3 [1] | [1] 2 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 4035410–4035728 | 4036863–4035735 | 8–1454 | 2 [1] | [1] 2 | [rrsA] | [rrsA] |
| * | * | ÷ | NC_000913 | 4542050 | 4548165 | 6116 | 20 [0] | [0] 2 | [fimE]–[fimF] | [fimE],fimA,fimI,fimC,fimD,[fimF] |
| * | * | ÷ | NC_000913 | 4548357 | 4576732 | 28376 | 2 [0] | [0] 45 | [fimG]–yjiT | [fimG],fimH,gntP,uxuA,uxuB,uxuR,yjiC,ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,ytiE,yjiR,yjiS,yjiT |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 156143 = | 8 (0.250) | 3 (0.090) | 3/488 | 2.4 | 27.3% | coding (59/741 nt) | yadV | putative fimbrial chaperone YadV |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 156146 | 9 (0.280) | 16 (0.490) | 16/488 | 0.7 | 64.0% | coding (56/741 nt) | yadV | putative fimbrial chaperone YadV |
| ? | NC_000913 | = 275149 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 12 (0.370) | 12/488 | 1.0 | 50.0% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 431322 = | 12 (0.370) | coding (692/885 nt) | tsx | nucleoside‑specific channel‑forming protein Tsx | |||||
| * | ? | NC_000913 | 273955 = | NA (NA) | 8 (0.250) | 8/486 | 1.4 | 38.1% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 538670 = | 13 (0.400) | coding (1038/1455 nt) | ybbW | putative allantoin transporter | |||||
| * | ? | NC_000913 | = 382398 | NA (NA) | 5 (0.160) | 5/484 | 1.9 | NA | noncoding (1139/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 431330 | 11 (0.340) | 17 (0.530) | 17/488 | 0.7 | 60.7% | coding (684/885 nt) | tsx | nucleoside‑specific channel‑forming protein Tsx |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 538673 | 14 (0.430) | 9 (0.280) | 9/488 | 1.3 | 39.1% | coding (1041/1455 nt) | ybbW | putative allantoin transporter |
| ? | NC_000913 | = 575785 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 607765 = | 1 (0.030) | 32 (0.990) | 28/486 | 0.2 | 97.0% | noncoding (28/60 nt) | sokE | small RNA SokE |
| ? | NC_000913 | = 3722075 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 1186541 | 10 (0.310) | 7 (0.220) | 7/486 | 1.6 | 41.2% | coding (698/1227 nt) | pepT | peptidase T |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1394208 | 12 (0.380) | 4 (0.130) | 4/482 | 2.1 | 25.0% | coding (982/1614 nt) | mppA | murein tripeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1396044 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1394548 | 6 (0.190) | 9 (0.280) | 9/488 | 1.3 | 60.0% | coding (1322/1614 nt) | mppA | murein tripeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1446828 = | 11 (0.340) | 7 (0.220) | 7/488 | 1.6 | 38.9% | coding (456/906 nt) | feaR | DNA‑binding transcriptional activator FeaR |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1743497 = | 9 (0.280) | 9 (0.280) +G |
8/486 | 1.4 | 50.1% | coding (41/1374 nt) | mdtK | multidrug efflux pump MdtK |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 44 (1.360) | 38/488 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4576733 = | 0 (0.000) | intergenic (+2802/+179) | yjiT/mcrC | putative uncharacterized protein YjiT/Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit | |||||
| * | ? | NC_000913 | = 2558698 | 1 (0.030) | 41 (1.310) | 36/472 | 0.1 | 98.8% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | ethanolamine ammonia‑lyase reactivase EutA | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 20 (0.620) | 16/486 | 0.7 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542049 | 0 (0.000) | coding (13/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | 4092855 = | 17 (0.530) | 5 (0.160) | 5/486 | 1.9 | 22.7% | intergenic (‑32/+269) | frvA/rhaM | putative PTS enzyme IIA component FrvA/L‑rhamnose mutarotase |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||