| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,880,635 | T→C | L138L (TTA→TTG) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,880,635 | 0 | T | C | 96.7% | 84.3 / ‑3.9 | 30 | L138L (TTA→TTG) | casD | type I‑E CRISPR system Cascade subunit CasD |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (15/14); minor base A (1/0); total (16/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.96e-01 | |||||||||||
AATCACATACCATTCTCGGGAAGCAAATTGTCGAGGCAAGGTGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACGCAACCCCGTTACAGACACACGACGATCGTCAAGAATGAGTTCATCGCAGCGCACTGCAAATTGCACACTCTCTG > NC_000913/2880401‑2880876 | aaTCACATACCATTCTCGGGAAGCAAATTGTCGAGGCAAGGTGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCa > 2:89127/1‑250 (MQ=255) catgctcGGGAAGCAAATTGTCGAGGCAAGGTGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGGAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTTACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTTCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGAt < 2:38462/247‑1 (MQ=255) ggAAGCAAATTGTCGAGGCAAGGAGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAAATGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTATGAGGATCCGATGCCTGACATGTCCCCCAAACAAGCGGGTGTGTTAGTGAGCAACTTCTCCGCCCCAGGTACGGTGTCTACCGAGGCTTAAATACTGCTTTTTCAAGTTCTGAGATAACCATCg > 1:129563/1‑251 (MQ=255) cgtcgCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGATAGCGACGGTAAag < 2:232508/251‑1 (MQ=255) cgtcgCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTaaa < 1:72512/250‑1 (MQ=255) gcCGTAAATTTTAAATGATGCCCTGTAACTGATTACTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGACGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATc > 1:253645/1‑251 (MQ=255) ccGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATc > 1:98618/1‑250 (MQ=255) aaaTGTTGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATGTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGTAACTTCTCCTCCCCAGGTAAGTTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTc < 1:20159/251‑1 (MQ=255) tAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGCTGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCACCTTCTCCGCCCCAGGTAAGGTGAATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTg > 1:196818/1‑250 (MQ=255) tAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTAATACTTTAATAGCGCCTTCTGAGGCTCCGCTGCCTCACATGTCCCCAAAAAAAGCGGGTCTGTTAGTGGGCAACTTCTCCACCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCCAGTTCTGAGATACCCATCGTTGCATGGGGTGTTAACCAGAGAGAGACGGTAAAGGAGGCATCACATAAATATTCGAGCCATGTTTg > 2:16332/1‑250 (MQ=255) tGATTACTCACTATATATAACGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGTATCCGATGCCAGACATGTCCCCAAAAACAGCGGGTGTGTTAGTAGGCAACTTCTCCGCCCCAGGTAAGGTGGATACCGAGGCTTCAATACTCCTTTTTCAAGTTCTGAGATAACCATCGGTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCCTCACATAAATATTCGCGACATGTTTGAATCg > 2:301618/1‑251 (MQ=255) gATTCCTCACTATATATAACGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGTGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGc < 1:288961/218‑1 (MQ=255) gATTCCTCAATCTATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGc > 2:288961/1‑218 (MQ=255) atatatatCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGTATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCTCCCCAGGTAAGGTTTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGATCGACGGTAAAGGAGGCATCACATAAATATTCGCTCCATGTTTGAATCGTTTCATGACtt < 1:50601/250‑1 (MQ=255) atatCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCa > 1:115689/1‑250 (MQ=255) aaTTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTCAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCt > 1:105331/1‑251 (MQ=255) aTAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAgg > 1:239647/1‑251 (MQ=255) aaGCGCCTTCTGAGGATCCGATTCCTGACACGTCCCCAAAAAAAGCGGGTGTGTTAGTTGACAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTGCAATACTGCTTTTTCAAGTTCTGAGATAACCAGCGTTGCATGGGGTGTTAACCAGAGAGAGACGGTAAAGGAGGCAGCACATAAATAGTCGCGCCATGTTTGAATCGTTTCATGACTTGTCAAAGCACGGTAATCTTCTCGCGCTCCAAGGa < 2:160976/250‑1 (MQ=255) ccTTTTGAGGGTCCGATGCCTGACAGGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGGTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACAGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTa < 2:173381/251‑1 (MQ=255) cggAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGATCCAAGGACTGTATgtt < 2:226181/249‑3 (MQ=255) gAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTa > 1:230362/1‑250 (MQ=255) aaTCCAATGCCTGAAATGCCCCCAAAACAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCACGCTCTGAGATAACCATCGTTGCATGGGGCGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATc > 2:135163/2‑250 (MQ=255) aCATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATAGTTGCCTGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACGCAACCCCGtt > 1:219666/1‑250 (MQ=255) aaGCGGGTGTGTTAGTGGGCAACTGCTCCGCCCCTGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTTGGAGAAAACAATCGTTGCATGGGGTGTTAAACAGAGAGCGACGGTAAAGGAGGCATCACATAAATATGCGCGCCATGTTTGAATCGTTTAATGACTGTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAAGCACGCAACCCCGTTTCAGACACacgacgtt < 2:143836/251‑3 (MQ=255) cgtcGCCCCAGGTTAGGTTTATACCGAGGCTTCCATAATGCTTTTTCAAGTTCTGAGATAACCAGCGCTGAATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTGTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACTCAACCCCCGTACATACACACGTCGAGCGTCAAGAATGAGtgcagcgctgc < 2:222642/247‑11 (MQ=255) ccGCCCCAGGTAAGGTGTATACCGAGGCGTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTCAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACGCAACCCCGTTACAGACACACGACGATCGTCAAGAATGAGTTCATCGCAgc < 2:105331/248‑1 (MQ=255) cactagttAAGGTGTATACCGAGGAGTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTGAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACGCAACCCCGTTACAGACACACGACGATCGTCAAGAATGAGTTCATCGCAGCGCAc < 2:274971/242‑1 (MQ=255) aGGTAAGGTGTCTACAGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGtt > 2:42811/1‑123 (MQ=255) aGGTAAGGTGTATACCGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGtt < 1:42811/123‑1 (MQ=255) ccGAGGCTTCAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACGCAACCCCGTTACAGACACACGACGATCGTCAAGAATGAGTTCATCGCAGCGCACTGCAAATTGCACACTCTCTg > 1:174368/1‑251 (MQ=255) | AATCACATACCATTCTCGGGAAGCAAATTGTCGAGGCAAGGTGATCATCGGTTCGTCGCGCGCCGTAAATTTTAAATGATGCCCTGTAACTGATTCCTCACTATATATATCGCCGCCAACGGGCTCATAATTTAATAGCGCCTTCTGAGGATCCGATGCCTGACATGTCCCCAAAAAAAGCGGGTGTGTTAGTGGGCAACTTCTCCGCCCCAGGTAAGGTGTATACCGAGGCTTTAATACTGCTTTTTCAAGTTCTGAGATAACCATCGTTGCATGGGGTGTTAACCAGAGAGCGACGGTAAAGGAGGCATCACATAAATATTCGCGCCATGTTTGAATCGTTTCATGACTTTTCAAACCACGGTAATCTTCTCGCGCTCCAAGGACTGTATGGTAATCACGCAACCCCGTTACAGACACACGACGATCGTCAAGAATGAGTTCATCGCAGCGCACTGCAAATTGCACACTCTCTG > NC_000913/2880401‑2880876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |