New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4092855 =	17 (0.530)	5 (0.160)	5/486	1.9	22.7%	intergenic (‑32/+269)	frvA/rhaM	putative PTS enzyme IIA component FrvA/L‑rhamnose mutarotase
	?	NC_000913	4498181 =	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

GTTGTTTAACGCAGGCGCTTTTACCGTGCGGCACGGCGACACCGGAACCAAATCCAGTAGAGTGCATTTTTTCGCGCAGCAGCAGGGTTTGCAGGAACTGGTGTGAGTCGGTGATAAAACCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCG  >  NC_000913/4092607‑4093078                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                gttgttTAACGCAGGCGCTTTTCCCGTGCGGCACGGCGACACCGGAACCAAAGCCAGTAGAGTGCATTTTTTCGCGCAGCAGCAGGGTTTGCAGGAACTGGTGTGAGTCGGTGATAAAACCGTTTTGTAACGCTATTGTCGCCAACGGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTGGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAAtt                                                                                                                                                                                                                               <  2:107187/251‑1 (MQ=255)                     taactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatacccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatatgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATTGTAATGGTGGAGCGATTa                                                                                                                                                                                                             <  2:207670‑M1/21‑1 (MQ=255)                               gCACGGCGACACCGGAACCAAATCCAGTAGAGTGCATTTTTTCGCGCAGCAGCAGGGTTTGCAGGAACTGGTGTGAGTCGGTGATAAAACCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGAGGAGAgg                                                                                                                                                                                                 <  1:253920/251‑1 (MQ=255)                                                                 cATTTTTTCGCGCAGCAGCAGGGTTTGCAGGAACTGGTGTGAGTCGGTGATAAAACCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGAc                                                                                                                                                                 >  2:102595/1‑249 (MQ=255)                                                                         cgcgCAGCAGCAGGGTTTGCAGGAACTGGTGTGAGTCGGTGATAAAACCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAg                                                                                                                                                       <  1:138733/251‑1 (MQ=255)                                                                         cccggttcaaagctctgctgaacaagggcgatctttgcctgtgtggtacgccgtctgcgagtctccgggcctaagacatcaatcatctgttctccaatgactagtctaaaacctagtattaagactatcacttatttaagtgatattggttggcaggagattcagggggacagtctaATTGTAATGGTGGATGGATTAGGGGATGAGAGGCGATATGTCGGTAAACAATCACAATTGGAGACAGAGTGaaa                                                                                                                                                        >  2:207325‑M1/178‑251 (MQ=255)                                                                             gttcaaggctctgctgaacaattgcgatcttgtcctgtgtggtacgccgtctgcgtttctccggtcctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttattgaagtgatattgggtgtctggatattcagggggccagtctaATTGAAATGGTTGAGCGATAGAGTGATGAGAGGCGATATGTCGGTAAACAATGTCAAGTTGAGACAGATTGAAAGGTc                                                                                                                                                    >  2:155066‑M1/174‑251 (MQ=255)                                                                                                              cctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTAttt                                                                                                                   >  1:306268‑M1/141‑251 (MQ=255)                                                                                                                    aaaaCCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTtaaataaa                                                                                                            <  2:126367/251‑1 (MQ=255)                                                                                                                    aaaaCCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTtaaataa                                                                                                             <  1:234425/250‑1 (MQ=255)                                                                                                                           ttttGTAACGCTATTGTCGCCAACTGCTGAAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACGCCATAAAATATATTTTAATCAATTGTAATGGTTGAGCGATTAATTGAAGAGATGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGCTCAGATTTGCGGAGTAATGCACATAATCGTTATTTAAATAAACCACAt                                                                                                      <  2:311959/250‑1 (MQ=255)                                                                                                                              tGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGaa                                                                                                   <  2:319613/250‑1 (MQ=255)                                                                                                                                  aCGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCAtt                                                                                              <  1:244148/251‑1 (MQ=255)                                                                                                                                        atGTCGCCAACTGCTACAGAGCGGATTAGGCGACTTAGCCCTTTATAATCAGG‑TAAGTACAGCTTGCAATAATACATGCCATTATTGGGACTTCTTTAAATATAGTGTAATTAATTTTAATGTTTGAGAGATTAAGTGATGCGATGCGATATGTCGGTAAACAATGACAATTTGACACAGAGTTAAAGGACATATTTGCGGACTGATGCATAGAACGGTTATTTAAATAAACCTCAGGAATCATTATTggg                                                                                        <  1:241866/250‑1 (MQ=255)                                                                                                                                                        cAGAACGGAATTATCGCTATTGCCCTGACTATTCAGG‑TCAATACAGCTGGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAAGATATGTTAATCAAGTGTAATGGTGGAGCGATTAAGTGGTGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGTCAGAGTGAAAGGTCAGATTTGCGGAGTAATGCTCATAATGGTTAGTTATATAAACCACATGAATCATTTATGGGTGAttgctttttgttg                                                                        <  2:216589/251‑12 (MQ=255)                                                                                                                                                           aaCGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGa                                                                     <  1:180183/251‑1 (MQ=255)                                                                                                                                                                  aaaGCGGCATTGCCCTGAAAATTCAGGGTAAAT‑CAGCTTGCAGTAAGAGCTGCCATTAAACGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTc                                                              <  2:240570/250‑1 (MQ=255)                                                                                                                                                                      ccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTcaca                                                           >  1:256542‑M1/85‑251 (MQ=255)                                                                                                                                                                                                          gCAGTAAGAGCTGCCATTAATCGGACTCCATCAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTa                        >  1:95558/1‑250 (MQ=255)                                                                                                                                                                                                             gTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAatat                    <  1:119472/251‑1 (MQ=255)                                                                                                                                                                                                                             aacGGACTCCCTAAATTATATTTTAATCACTTGTAATGGCGGAGAGATTAAGTGAAGAGATGCGATTTGTCGGTAAACAATGCCAATTTGAGACAGAGTGACAGGTCAGATTTGCGGAGTAATGGACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTTTTTTTGTGATTAACTCACAATGTATAAGGGAAATTTAACTTACCGGGAGATGTAATCTGTTTAATTTTTTAAAt    >  2:7629/3‑251 (MQ=255)                                                                                                                                                                                                                                ggACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCg  >  2:67112/1‑250 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                GTTGTTTAACGCAGGCGCTTTTACCGTGCGGCACGGCGACACCGGAACCAAATCCAGTAGAGTGCATTTTTTCGCGCAGCAGCAGGGTTTGCAGGAACTGGTGTGAGTCGGTGATAAAACCGTTTTGTAACGCTATTGTCGCCAACTGCTTCAGAACGGAATAAGCGCCATTGCCCTGAATATTCAGG‑TCAATACAGCTTGCAGTAAGAGCTGCCATTAATCGGACTCCATAAAATATATTTTAATCAATTGTAATGGTGGAGCGATTAAGTGATGAGAGGCGATATGTCGGTAAACAATGACAATTTGAGACAGAGTGAAAGGTCAGATTTGCGGAGTAATGCACATAATGGTTATTTAAATAAACCACATGAATCATTAATGGGTTATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCG  >  NC_000913/4092607‑4093078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.