| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,033,648 | C→T | intergenic (‑227/‑1) | drpB ← / → rseX | cell division protein DrpB/small regulatory RNA RseX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,033,648 | 0 | C | T | 88.9% | 20.9 / ‑5.4 | 9 | intergenic (‑227/‑1) | drpB/rseX | cell division protein DrpB/small regulatory RNA RseX |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (4/4); total (4/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTCTTGTTTATATTTTTTGGGCCGGCATGATGCCGGCTTTTTTTTATGCCTTCATTAATGTGCGCCTGATCACACCAGCCGTTTGGCGCAACAATCATTGATACCCCCTATGTTTCCGCTCAACTCATAACATATTGATATACATTTATAATTTTCATGAATATTTATATTTAGAATTCATAATTATGA > NC_000913/2033415‑2033883 | aTTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACTTTT‑ttat > 1:71780/1‑241 (MQ=255)aTTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACTTTT‑ttat < 2:71780/241‑1 (MQ=255) cTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACTTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTc > 1:175370/1‑251 (MQ=255) aaCATATAGCTAAATTTTGCGCAACGGCAGTCCGTCCAGGAAAACTCGTTTTGAGCGATTTTGTTTCTATTTGATATCGGCTTTATTACTTCCTTTAATCAATATATTAGCAATGATTACAATTATACTTAT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTCTCGTCTTGTTTATATTTTTTGGGCCGGCATGATACGGGCTTTTTTTTATTCCTTCATTCATGTGCGACTGCTCACAcc > 1:283743/1‑251 (MQ=255) ggAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACTTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTCTTGTTTATATTTTTTGGGCCGGCAGGATGCCGGCTTTTTTTTAGGCCTTCATTAATGTGCGCCTGATCACACCAGCCGTTTGGCGCAACAATCATTGATACCCCCTATGtt < 2:231620/251‑1 (MQ=255) ggggatttgtttgagcTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTAAAATTAT‑CCTTTGTTAGTATGCTGTGTCAGGATGGGTCCGGTATGAGCCTTTGATCGTCTTGTTTATATTTTGTGGGACGGCATGATGACGGCTTTTTGTTATGCATTAAGTAAGGGGTGCTTTAGCACACCAGCCGTTTGGCGCAACAATCAGGGATACCCACCGTGGTTCTGCTCAACTCATa < 2:283743/236‑1 (MQ=255) tCATTTAATCAATATATTAGCACTGATTACAATTATCCTTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTCTTGTTTATATTTTTTGGGCCGGCATGATGCCGGCTTTTTTTTATGCCGTCATTAATGTGCGCCTGATCACACCAGCCGTTTGGCGCAACAATCATTGATACCCCCTATGTTTCCGCTCAACTCATAACATATTGATATACATTTATAATTTTCATGAatatt < 1:216330/250‑1 (MQ=255) tCATTTAATCAATATATTAGCACTGATTACAATTATACTTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTCTTGTTTATATTTTTTGGGCCGGCATGATGCCGGCTTTTTTTTATGCCTTCATTAATGTGCGCCTGATCACACCAGCCGTTTGGCGCAACAATCATTGATACCCCCTATGTTTCCGCTCAACTCATAACATATTGATATACATTTATAATTTTCATGAatattt > 1:310180/1‑251 (MQ=255) gATTACAATTATACTTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTCTTGTTTATATTTTTTGGGCCGGCATGATGCCGGCTTTTTTTTATGCCTTCATTAATGTGCGCCTGATCACACCAGCCGTTTGGCGCAACAATCATTGATACCCCCTATGTTTCCGCTCAACTCATAACATATTGATATACATTTATAATTTTCATGAATATTTATATTTAGAATTCATAATTATGa < 1:145704/250‑1 (MQ=255) | ATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTACAATTATACCTTT‑TTATTATTCTGTGTCATGATGCTTCCGTTATTAGCCTTTTATCGTCTTGTTTATATTTTTTGGGCCGGCATGATGCCGGCTTTTTTTTATGCCTTCATTAATGTGCGCCTGATCACACCAGCCGTTTGGCGCAACAATCATTGATACCCCCTATGTTTCCGCTCAACTCATAACATATTGATATACATTTATAATTTTCATGAATATTTATATTTAGAATTCATAATTATGA > NC_000913/2033415‑2033883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |