New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 156146	9 (0.280)	16 (0.490)	16/488	0.7	64.0%	coding (56/741 nt)	yadV	putative fimbrial chaperone YadV
	?	NC_000913	= 275149	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GGCTGTGTACATTAATTTGATTGTTTGCCCACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTACGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTATATTCATTCAATCAATTTAACTGGTGAATACTTACTGATAAGTAATGGTGTATGCAGTGTTAGTTTTTACATAACCAGCAGTTGCTGTTTGGTCTGCGACGGCACGAACGTAAGACGCTTTAAAAT  >  NC_000913/155902‑156393                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                        ggctgTGTACATTAATTTGATTGTTTGCCCACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACGAAAAGcc                                                                                                                                                                                                                                                    <  2:31962/250‑1 (MQ=255) ggctgTGTACATTAATTTGATGGTTTGCCCACGTTTGGCAGCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaagg                                                                                                                                                                                                                                                   <  2:253066‑M1/251‑7 (MQ=255)                   aactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAGCCATACAGGTTACGAAGCATa                                                                                                                                                                                                                                 >  1:9851‑M1/224‑251 (MQ=255)                         ttGCCCACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGTGTTATTCCCTTTAGTTTCCAGACGTGCGTTGACACTTTTTTGATCGGTTTTATATATCACGCGAGTACCCGAAATGACAATTTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCt                                                                                                                                                                                                                            <  1:294221/250‑1 (MQ=255)                          tGCCCACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCtgt                                                                                                                                                                                                                          >  2:284730/1‑251 (MQ=255)                           gCCCACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatg                                                                                                                                                                                                                              >  1:222589‑M1/1‑219 (MQ=255)                              cACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                                                                                                                                      >  1:223232‑M1/1‑216 (MQ=255)                                       cATCAATTCGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                                                                                                                             <  2:222589‑M1/251‑45 (MQ=255)                                          cAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTATCCAACTCGGGACAAGCAACTGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACTCTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                                                                                                                                           <  2:124814‑M1/250‑47 (MQ=255)                                                gcgATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAAc                                                                                                                                                                                                    >  1:226142/1‑251 (MQ=255)                                                               tAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGTCAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacatgtccttgatatgagatcatgtttgtctcctggcgccatagaacagggtccaac                                                                                                                                                                                     >  1:4878‑M1/1‑183 (MQ=255)                                                                    gTAAAAGTGACTGTTATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCGGGTCAAGCAACGGGTTATTCACTATAGTGTCCAGACGTGCGTTGTCACTTTTTTGATCGCTTTTATATATTACGGGAGTGCCCGAAATGACAACGTTCGCAATAGACTTTAAACTAAAAGCCATACAGGTTGCGATTCATAAAGATGTTGTATGTTTGGGGTTAAAAAACATAAACGAGCCCTCATagag                                                                                                                                                                                <  2:48506/251‑1 (MQ=255)                                                                                          cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGaataat                                                                                                                                                           >  2:148115‑M1/153‑250 (MQ=255)                                                                                                            cGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                                                                                                                                         <  2:223232‑M1/250‑113 (MQ=255)                                                                                                              ccAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTATTTGATCGCTTTTATATATTACGCGAGTACCCGACATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaccttaccttcgccgccagtgaattcagcagtaagcg                                                                                                                                      >  1:310581‑M1/1‑136 (MQ=255)                                                                                                                  tATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTg                                                                                                                                  >  1:16102/1‑251 (MQ=255)                                                                                                                       aaCCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatgtggagccatagaacagggttcagcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                                                                                                                                  <  1:166999‑M1/246‑120 (MQ=255)                                                                                                                                                 aTTCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca                                                                                                   <  1:112904‑M1/251‑151 (MQ=255)                                                                                                                                                  ttCCCTTTATTTTCCAGACGTGCGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATAACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTATATTCATTCAATCAATTTAACTGGTGAAt                                                                                                   >  1:3709/1‑250 (MQ=255)                                                                                                                                                      aggcatttacggtagaaaaaatgggataaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAACCATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTATATTCATTCAATCAATTTAACTGGTGAAtactta                                                                                              >  2:121677‑M1/93‑251 (MQ=255)                                                                                                                                                        ttatttcccatacttgcgttgacacttttgtgatcGCTTGTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttactttcgccgacagtgaattcagcagtatgcgccgtcagaccagaaaagatattttcttgtcccgcatggagc                                                                                             <  1:202068‑M1/234‑157 (MQ=255)                                                                                                                                                                          ttGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTATATTCATTCAATCAATTTAACTGGTGAATACTTACTGATAAGTAATGGTGTATg                                                                          >  1:305128/1‑251 (MQ=255)                                                                                                                                                                                                       tACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcggtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagt                                                              >  1:94269‑M1/1‑47 (MQ=255)                                                                                                                                                                                                       tACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcggtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagt                                                              <  2:94269‑M1/234‑188 (MQ=255)                                                                                                                                                                                                         cgcgAGTACCCGAAATGCAAATGTCCGCAATAGCCGATGAACTAAgaaaggtgcgaacaagtccctgatatgagataatgtttgtcctctggagccatagaccagggttcatcatgagtcatcaacttaccttcgccgacagtgatttcagcagtaagcgccgtcagacaagccaagagattttattgtcccgcatggagcagattctgccatggcagaacatggaggcagtcctcgaaccgatttacacc                                           >  2:149330‑M1/1‑45 (MQ=255)                                                                                                                                                                                                                     aaaTGACAATGTCCGCAATAGACGATGAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaat                               >  1:261629‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                       aTGACAATGTCCGAAATAGACGATGAACTAAggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggatccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaatgagattttcgtgtcccgcatggagcagattctgccttggcaaaacttggtggaagtcatcgaggcgttttaccccaaggggggtaatgg                             <  2:167535‑M1/251‑221 (MQ=255)                                                                                                                                                                                                                                                    aaaaGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTATATTCATTCAATCAATTTAACTGGTGAATACTTACTTATAAGTAATGGTGTATGCAGTGTTAGTTTTTACATAACCAGCAGTTGCTGTTTGGTCTGCGACGGCACGAACGTAAGACGCTTTAAAAt  <  2:103628/249‑1 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                        GGCTGTGTACATTAATTTGATTGTTTGCCCACGTTTGGCATCAATACGCGATACTGGCGGCGTAGCAGTAAAAGGGACTGTAATACTGCCAGGCTCAGCGTTGTCATCGCCAGTATCTAACCAACTCTGGACAAGCAACGGGTTATTCCCTTTATTTTCCAGACGTACGTTGACACTTTTTTGATCGCTTTTATATATTACGCGAGTACCCGAAATGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTATATTCATTCAATCAATTTAACTGGTGAATACTTACTGATAAGTAATGGTGTATGCAGTGTTAGTTTTTACATAACCAGCAGTTGCTGTTTGGTCTGCGACGGCACGAACGTAAGACGCTTTAAAAT  >  NC_000913/155902‑156393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.