New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	607765 =	1 (0.030)	32 (0.990)	28/486	0.2	97.0%	noncoding (28/60 nt)	sokE	small RNA SokE
	?	NC_000913	= 3722075	NA (NA)					noncoding (1443/1443 nt)	IS150	repeat region

GACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGTATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTGGAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCC  >  NC_000913/607524‑608010                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                      gaaaagccacttgtctgaacaatgcagtggtagagtgattctttggaaccttaaagtcggacagtttttgtcttgatgagttcagtaatataagcgacctgaaggaagctgttacggaatatattgaataatacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatataggaatcagacctatatgcctcgtgtttaactgtccaactttttggggaaagtacaCCCTGGGGCt                                                                                                                                                                                                                                              <  2:45919‑M1/10‑1 (MQ=255)        caattgtctggataatgctgtggtggagtgtttctttggaaccttaaagtcggagtgtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTc                                                                                                                                                                                                                                       <  2:131419‑M1/17‑1 (MQ=255)                  gataatgctgtggtggagtgtttctttggaaccttaaagtcggagtgctttaaacttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcatgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGa                                                                                                                                                                                                                              <  1:24349‑M1/26‑1 (MQ=255)                        gctgtggtggagtgtttctttggaaccttaaagtcggagtgtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAAttt                                                                                                                                                                                                                       >  1:131419‑M1/219‑251 (MQ=255)                                           gtggaaccttaaagtcggattgtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaatgagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaacgttttgggggcagtgcaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGAGGGTAGTCCcttct                                                                                                                                                                                                      >  2:20949‑M1/200‑249 (MQ=255)                                              gaaccttaaagtcggagtgtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGc                                                                                                                                                                                                  <  1:124345‑M1/54‑1 (MQ=255)                                                     aaagtcggagtgtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGc                                                                                                                                                                                          >  2:33221‑M1/190‑251 (MQ=255)                                                     aaagtcggagtgtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaagatattgaatcctacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaagttcggaattagacctagatgcctcgtgtgtaactgtccatcttgttggggtcagtacaCCCTGGGGCTGCCAGTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGc                                                                                                                                                                                          >  1:323930‑M1/190‑251 (MQ=255)                                                          aaaaaaaCGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGTATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTGGAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTgtactgcacccattttgtt                                                                                                                                                                                                                                 <  1:307574/207‑19 (MQ=255)                                                                gtttttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACAt                                                                                                                                                                               <  1:234982‑M1/73‑1 (MQ=255)                                                                   tttatcttgatgagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCt                                                                                                                                                                            <  2:33034‑M1/76‑1 (MQ=255)                                                                              gagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATg                                                                                                                                                                 >  1:90359‑M1/165‑251 (MQ=255)                                                                              gagttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATg                                                                                                                                                                 >  1:25645‑M1/165‑251 (MQ=255)                                                                                gttcagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGcc                                                                                                                                                               >  1:229753‑M1/163‑251 (MQ=255)                                                                                   cagtaatataagcgaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCtt                                                                                                                                                            >  2:278628‑M1/160‑251 (MQ=255)                                                                                       aatataagcgaactgaaggatgctgttacggaatatattgaatactacaaccgcagaagaattagcccgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTgct                                                                                                                                                         >  1:86092‑M1/156‑249 (MQ=255)                                                                                           taagcgaactgaaggatgctgttacggactatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgactatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGt                                                                                                                                                    <  2:316363‑M1/100‑1 (MQ=255)                                                                                            aagcgaactgaaggatgctgttacggaatctattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTc                                                                                                                                                   <  1:74054‑M1/101‑1 (MQ=255)                                                                                                         gatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGtt                                                                                                                                      >  1:33034‑M1/138‑251 (MQ=255)                                                                                                          atgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGttt                                                                                                                                     >  2:234982‑M1/137‑251 (MQ=255)                                                                                                          aggctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccacctttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCGTCTTCGCATGGAGGCAAGATAAACATGCTGACGAAATATGGCCTTGCGGCAGTCATAGTGCTGTGttt                                                                                                                                     >  2:115991‑M1/137‑251 (MQ=255)                                                                                                                  acggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTg                                                                                                                              >  1:69972‑M1/129‑250 (MQ=255)                                                                                                                    ggaatatattgaaaactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTACCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTg                                                                                                                           <  2:102597‑M1/125‑1 (MQ=255)                                                                                                                                  actacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCt                                                                                                             <  1:80448‑M1/139‑1 (MQ=255)                                                                                                                                                 gaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCt                                                                                              <  2:91048‑M1/154‑1 (MQ=255)                                                                                                                                                          tgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAGTTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGAGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGtt                                                                                     <  2:244612‑M1/163‑1 (MQ=255)                                                                                                                                                                                  ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTg                                                              <  1:94817‑M1/186‑1 (MQ=255)                                                                                                                                                                                    gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttatggggtcagtccaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATAGGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCAGGCCGGAGACGCGCTGTGTGAGTTTACGGTGAAGGAACGGAATATTGAGt                                                           >  2:132770‑M1/63‑251 (MQ=255)                                                                                                                                                                                    gaatatcggaatcagacctatatgcctcgtgtttaactgtccaacattttggggtcagtacaCCCTGAGGCTCCCACTCCAAACCCGAACAATCTGGATGGTAGTACCTTCATCGCATGGCGGCAATATAAACCTGCTGACGAAATATGCCCTTGCGGCAGTCATCGAGCTGTGATTAACGGGGCTGGGATTTACGCTTCTGGTAGGAGACTCGCTGAGTGAGATTACGGAGAAGGAACGTAATATTGAGt                                                           <  1:193732‑M1/189‑1 (MQ=255)                                                                                                                                                                                                                gtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCt                                                                                                             >  2:143161‑M1/35‑173 (MQ=255)                                                                                                                                                                                                                gtgtttaactgtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCt                                                                                                             <  1:143161‑M1/139‑1 (MQ=255)                                                                                                                                                                                                                          gtccaactttttggggtcagtacaCCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCg                     <  1:265396‑M1/227‑1 (MQ=255)                                                                                                                                                                                                                                             gtacaCCCTGGGGCTGCCACTCCAACCCCGCACAATTTGGATGGTCGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGCACGTAATATTGCGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATccc  <  2:133058‑M1/246‑1 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                      GACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAGTTGATTAAATGAGGAGTGAGAAGTCCGAAACAGGACTCACTGTATAAATAAACAGCTATTTTGTTGAGGAAGGGTAAGATAACGGCGGGTGCCTGAAGCTTTCCGGTTTCAGGTTTACTCTGAGGTCTGGAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCC  >  NC_000913/607524‑608010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.