mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,444,925 | 0 | C | G | 52.5% | 3.5 / 65.7 | 41 | G102A (GGT→GCT) | rpsE | 30S ribosomal subunit protein S5 |
| * | NC_000913 | 4,037,496 | 0 | A | T | 50.0% | 9.8 / 61.4 | 38 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA |
| * | NC_000913 | 730,748 | 0 | T | C | 32.4% | 60.9 / 10.0 | 37 | I389T (ATC→ACC) | rhsC | rhs element protein RhsC |
| * | NC_000913 | 4,284,044 | 0 | T | A | 30.9% | 67.1 / 10.3 | 42 | T287S (ACA→TCA) | actP | acetate/glycolate:cation symporter |
| * | NC_000913 | 3,875,532 | 0 | A | T | 30.8% | 35.2 / 11.6 | 27 | H32L (CAT→CTT) | yidX | putative lipoprotein YidX |
| * | NC_000913 | 4,256,069 | 0 | G | C | 30.0% | 65.8 / 12.7 | 41 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 3,203,311 | 0 | T | A | 28.9% | 61.4 / 11.7 | 38 | *274L (TAA→TTA) | bacA | undecaprenyl pyrophosphate phosphatase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2067353 | NA (NA) | 3 (0.090) | 3/484 | 2.4 | 13.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3658105 = | 20 (0.620) | intergenic (‑51/‑261) | arrS/gadE | small regulatory RNA ArrS/DNA‑binding transcriptional activator GadE | |||||