New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 538673	14 (0.430)	9 (0.280)	9/488	1.3	39.1%	coding (1041/1455 nt)	ybbW	putative allantoin transporter
	?	NC_000913	= 575785	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

AACGCTGGGTTTAGTTGTGGCCTATATTCTGTTTGCGGTCGCCGGGGTATGTATTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTTGATGAACTGTATACCGCACCTGGCGATTATAAATATTACGATAACGGTTTTAACCTCACTGCGTTTTCAGTA  >  NC_000913/538424‑538919                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       aaCGCTGGGTTTAGTTGTGGCCTATATTCTGTTTGCGGTCGCCGGGGTATGTATTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGATCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATg                                                                                                                                                                                                                                                       >  1:35256‑M1/1‑250 (MQ=255)                 gtgGCCTATATTCTGTTTGCGGTCGCTGGGGTATGTATTTTTGCGTGAGCCTGTATTCACTACGGCGTTGATACCTGGAACGTGTTGGATATTGTTCAGCTTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTAACAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGa                                                                                                                                                                                                                                        <  2:276089/250‑1 (MQ=255)                   ggCCTATATTCTGTTTGCGGTCGCCGGGGTATGTATTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTg                                                                                                                                                                                                                                     <  2:207085/251‑1 (MQ=255)                                  gttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGc                                                                                                                                                                                                                       <  2:68171‑M2/37‑1 (MQ=255)                                     ggTCGCCGGGGTATGTATTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCCCTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTTATTGACAGTATTATCAGCTTGc                                                                                                                                                                                                                   >  2:230882/1‑251 (MQ=255)                                        tgcctgggTATTTATTGTTGTCGGAGTCAGTACTCACTTCGGCGCTTATTCCTGGAACTTGCTGGATATTGTTCAGGGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTTCTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGTTTATCAGATTTCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTg                                                                                                                                                                                                                 <  1:172013/245‑1 (MQ=255)                                         acgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGAt                                                                                                                                                                                                               >  2:13897‑M2/207‑251 (MQ=255)                                           cGGGGTATGTATTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCt                                                                                                                                                                                                             <  1:4080/251‑1 (MQ=255)                                                tatgtatTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                                                                                                                         >  1:48463‑M1/1‑203 (MQ=255)                                                            gggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGGACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATg                                                                                                                                                                                            <  2:45227‑M2/64‑1 (MQ=255)                                                                          cACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaccgggttcatcatgagt                                                                                                                                                                              >  2:171195‑M1/1‑177 (MQ=255)                                                                                      gATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCtttt                                                                                                                                                                  <  2:264744/251‑1 (MQ=255)                                                                                         aCCTGGAACGTGCTGGATATTGGTCAGCTTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGTTTATTCTGATGACATCTATCTCCACTAACGCGACCGGTAATATTATGCCAGCCGGTTATCAGATTTCCTCCATTGCACCGACTAAACTGACCTATAAAAACGTCGTACTGATTGCCAGTATTATCAGCTTGCGGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCt                                                                                                                                                               <  1:24650/251‑1 (MQ=255)                                                                                             ggaccGTGCTGGATATTGTTTAGCGTTGGTACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGGATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTct                                                                                                                                                             <  2:198831/245‑2 (MQ=255)                                                                                               cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTAGCTTTTCCTCGata                                                                                                                                                          <  1:266979‑M2/98‑1 (MQ=255)                                                                                                 ctaaaaactggggataacgccttaaatggcgaagcaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTATAAAAACGACGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGAtatt                                                                                                                                                        >  2:32517‑M2/151‑250 (MQ=255)                                                                                                                        aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTa                                                                                                                                <  1:13897‑M2/124‑1 (MQ=255)                                                                                                                             aGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTCTTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATggaaggtgcgcacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagccc                                                                                                                           >  2:297826‑M1/1‑126 (MQ=255)                                                                                                                                  gTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga                                                                                                                        <  1:137250‑M1/249‑129 (MQ=255)                                                                                                                                      gCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag                                                                                                                  <  2:9252‑M1/251‑135 (MQ=255)                                                                                                                                                ttGCGGTACTGTTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTTCCGCCATTGCACCGACAAAACTGACCTATtgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggaaccatagaacagggttcatcatgagtcatcaacttacctacgcctacagttaattcagcagtaagcgccgtcagacaagaaaagagattttcttg                                                                                                         <  1:148623‑M1/250‑144 (MQ=255)                                                                                                                                                    ggTACTGGTTATTCTGTTGACAACTATCTCCACTAACGCGAACGGTAATATTATTCCCGCCGGTTATCAGATTGCCGAAATTGCACCGCCAAAACTGACCTATAAAAACGGCGTCATGATTGCCAGTATTATCAGCTTGCTGATATGCCCGTGGAAATTAATGGAAAATCAGGACCGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTTTCATGATTTCGCTTTATTTtg                                                                                                    >  2:311004/1‑251 (MQ=255)                                                                                                                                                           gTTATTCGGATGACAACTATCTCCACTAACGCTACCGGTTATATTATTCCAGCCGGTTATCAGCTTGCCGCCCTTGCCCCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATCGGTGTCATGATGGCGCATTATTTTGTGGTGAt                                                                                             <  1:12692/251‑1 (MQ=255)                                                                                                                                                                  tgatgaCAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCgg                                                                                       >  1:60532/1‑250 (MQ=255)                                                                                                                                                                                 cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCGTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTtgat                                                                       <  1:318096‑M2/181‑1 (MQ=255)                                                                                                                                                                                                         tgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTTGATGAACTGTATACCGCACCTGGCGAt                                               >  1:300013‑M2/47‑251 (MQ=255)                                                                                                                                                                                                             aGCCGGCTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtcagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccc                                           >  2:244981‑M1/1‑46 (MQ=255)                                                                                                                                                                                                                                     tGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTTGATGAACTGTATACCGCACCTGGCGATTATAAATATTACGATAACGGTTTTAAc                    <  2:98521/250‑1 (MQ=255)                                                                                                                                                                                                                                                  cTGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaacttatccgctgga       >  1:15454‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                                     aCCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTTGATGAACTGTATACCGCACCTGGCGATTATAAATATTACGATAACGGTTTTAACCTCACTGCGTTTTCAGt   <  2:60532/251‑1 (MQ=255)                                                                                                                                                                                                                                                       atataAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGCATGCTTGGTCCGGTAATTGGTGGTATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTTGATGAACTGTATACCGAACCTGGCGATTATAAATATTACGATAACGGTTTTAACCTCACTGCGTTTTCAGTa  >  2:5707/2‑250 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       AACGCTGGGTTTAGTTGTGGCCTATATTCTGTTTGCGGTCGCCGGGGTATGTATTATTGCCGGAGCCAGTATTCACTACGGCGCTGATACCTGGAACGTGCTGGATATTGTTCAGCGTTGGGACAGCCTGTTCGCCTCGTTCTTTGCGGTACTGGTTATTCTGATGACAACTATCTCCACTAACGCGACCGGTAATATTATTCCAGCCGGTTATCAGATTGCCGCCATTGCACCGACAAAACTGACCTATAAAAACGGCGTACTGATTGCCAGTATTATCAGCTTGCTGATCTGCCCGTGGAAATTAATGGAAAATCAGGACAGCATTTATCTTTTCCTCGATATTATCGGCGGAATGCTTGGTCCGGTAATTGGTGTCATGATGGCGCATTATTTTGTGGTGATGCGCGGACAAATTAATCTTGATGAACTGTATACCGCACCTGGCGATTATAAATATTACGATAACGGTTTTAACCTCACTGCGTTTTCAGTA  >  NC_000913/538424‑538919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.