Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 421,027 C→T R14R (CGC→CGT proY → putative transporter ProY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913421,0270CT97.1% 106.0 / NA 35R14R (CGC→CGTproYputative transporter ProY
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (15/19);  minor base G (0/1);  total (15/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

CTGGGCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACATTACCGGCTGGACC  >  NC_000913/420784‑421267
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                 
cTGGGCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGCCCTCCAGCGCTCAGTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGCATTGATGGCAAGTAAGAACAAGCTAAAGCGTGGGATAAGAACCCGTCACATAc                                                                                                                                                                                                                                            >  2:247739/1‑251 (MQ=255)
 tGGGCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACg                                                                                                                                                                                                                                           >  1:327051/1‑251 (MQ=255)
   ggCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCt                                                                                                                                                                                                                                         <  1:30572/251‑1 (MQ=255)
       cAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTGCCCGTCACTTACGCTTTAt                                                                                                                                                                                                                                     <  2:214024/251‑1 (MQ=255)
                     gggtgAACAAGGTCTGGCGTGGATAATGCCATCAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGTCTAAGTACCCGGCACATTCGCTTTATGGCACTTGGTTCAg                                                                                                                                                                                                                      <  2:36473/247‑1 (MQ=255)
                       ccgtaCAAGGTCTGTCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCTCTGAACATTTGTTTTAACCACGGGGGTGCGATGCCCCGTGGTTTTTTATTGTGGTGATGGGTTAGGAATTGATGGAAAGTAAGAACATGCTAAAGCGTGGGCGAAGTTCCCGTCTCATACGCTTTATGGCACTGGGTTCAGCa                                                                                                                                                                                                                    <  2:197036/247‑1 (MQ=255)
                             aaGGTCTGGCGTGGTTCATGCCAACAGTGGTGATGGTGATTCTGGCCATTATCTGGGATCGCGAGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTGACATACGCTTTATGGCACTGGGTTCAGCAATTGGc                                                                                                                                                                                                              >  2:33647/1‑251 (MQ=255)
                                  cTGGCGTGGTTAATGCCAACAGTGGAGATGGTGGTTCTGGCCATTCTCTGGGATCGCGCGGCAGGACGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAACGCGTGGGCTAAGTACCCGTCACATACACTTTATGGCACTGGGTTCAGCAATTGGCACCgg                                                                                                                                                                                                         >  1:302571/1‑251 (MQ=255)
                                               tGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTg                                                                                                                                                                                                     <  1:83179/242‑1 (MQ=255)
                                               tGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTg                                                                                                                                                                                                     >  2:83179/1‑242 (MQ=255)
                                                         ggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGAc                                                                                                                                                                                   <  2:2417/250‑1 (MQ=255)
                                                           tgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGcc                                                                                                                                                                                >  1:50757/1‑251 (MQ=255)
                                                               ggtggtTCTGGCCATTATCGGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGGTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTTCCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCa                                                                                                                                                                            <  2:292453/251‑1 (MQ=255)
                                                                        ggCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGcct                                                                                                                                                                   <  2:47249/251‑2 (MQ=255)
                                                                              tATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCg                                                                                                                                                              >  1:111831/1‑250 (MQ=255)
                                                                                   gggATCGCGCGGCAGGTCGTCAGGGGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCg                                                                                                                                                          <  1:247739/249‑1 (MQ=255)
                                                                                                aGGTCGTCAGGTGCCCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAAGTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCtata                                                                                                                                           <  1:276590/251‑1 (MQ=255)
                                                                                                          gTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCggtgg                                                                                                                                 <  1:45941/251‑1 (MQ=255)
                                                                                                             aCCTCTAGCGCTCACTAACTCACTGAATATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGCTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTCCCCTTCACATACGCTTTATGGCACTGGGTTCAGCAATGGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATCTTATCTGGGGTAt                                                                                                                              >  2:174300/1‑251 (MQ=255)
                                                                                                                tCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATcgc                                                                                                                           >  2:148418/1‑251 (MQ=255)
                                                                                                                   aGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCgcggc                                                                                                                        <  1:320605/251‑1 (MQ=255)
                                                                                                                                                  aaCCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCgcggc                                                                                                                        <  2:286688/220‑1 (MQ=255)
                                                                                                                                                  aaCCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCgcggc                                                                                                                        >  1:286688/1‑220 (MQ=255)
                                                                                                                                                  aaCCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATg                                                                                         >  1:307974/1‑251 (MQ=255)
                                                                                                                                                              tcGATTCCCCGTTGTTTTTTATTGGGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGTTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCGATATTATCGGTGGTAGCGCGGCGTATATCATGATGCGTGCGCTGGGGGAAATTTCGGTACATa                                                                               <  2:209728/248‑1 (MQ=255)
                                                                                                                                                              gCGATGTCGCGTTGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTCCCCGTCTGATACGCTTTATGGCGCTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATaa                                                                              <  1:308415/250‑1 (MQ=255)
                                                                                                                                                                      ccGTGGTTTTTTATTGTGTTGATGGGCTAGGAATTGATGGAAAGTAAGACCAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTCTGCGTGCGCTGGGGGAAATGCCGGTACATAACTCGgccgc                                                                     >  2:292011/1‑251 (MQ=255)
                                                                                                                                                                                                ttAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAgg                                           >  1:47739/1‑251 (MQ=255)
                                                                                                                                                                                                               aaGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGc                            <  1:148418/251‑1 (MQ=255)
                                                                                                                                                                                                                     gAACAAGCTAAAGCGTGGGCTAAGTACCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGc                        >  1:317798/1‑249 (MQ=255)
                                                                                                                                                                                                                            cgaaggCGTGGGCTAAGTACCCGTCACATACGTTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGGTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCGCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACAt               <  2:272122/246‑1 (MQ=255)
                                                                                                                                                                                                                                  cGTGGGCCAAGTACCCGTCCCCTTCGCTTTATGGCCCTGGGTTCAGCAATTGGGCCCGGGCTTTTTTACCGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACATTACCgg         <  2:111831/251‑1 (MQ=255)
                                                                                                                                                                                                                                     gggCTAAGTACCCGTCACAGGCGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCTTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGTAAATGTCGGTACAGAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACATTACCGGCt       <  1:216007/250‑1 (MQ=255)
                                                                                                                                                                                                                                      ggCTAAGTACCCGTCGCATCCGCTTTATGGTCATGGGTTCAGCACTTGGCACCGGGCTGCTTTCCGGTTCGGCACACGCCATCAAAATGGCCGGTCCGTGCGTGTTGTTGGCCTACATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGCAATGTAGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTCTGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACATTAcaggatgg     >  2:127945/1‑244 (MQ=255)
                                                                                                                                                                                                                                          aaGTGCCCGTCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACATTACCGGCTGGAcc  <  1:173716/250‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                 
CTGGGCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGCCGGTCCGAGCGTGTTGTTGGCCTATATTATCGGTGGTATCGCGGCGTATATCATTATGCGTGCGCTGGGGGAAATGTCGGTACATAACCCGGCCGCCAGCTCTTTCTCGCGTTATGCGCAGGAAAACCTCGGCCCGCTGGCAGGTTACATTACCGGCTGGACC  >  NC_000913/420784‑421267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: