| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,046,403 | C→T | A489V (GCT→GTT) | yeeJ → | inverse autotransporter adhesin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,046,403 | 0 | C | T | 95.5% | 64.9 / ‑5.3 | 22 | A489V (GCT→GTT) | yeeJ | inverse autotransporter adhesin |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (14/7); minor base G (1/0); total (15/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
GCAGGCAGCCGTTATGATCTGGTGGATCGCAACAACAATATCGTTCTGGAATATCGCAAAAAAGAACTGGTTCGCCTGACCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGCTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTATTGCGCATGATGCAGCAGGTAATCCTGTTGTCGGG > NC_000913/2046159‑2046641 | gcaggcagCCGTTATGATCTGGTGGATCGCAACAACAATATCGTGCTGGAATATCGCAAAAAAGAACTGGTTCGCCTGACCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGTCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCg < 1:108280/251‑1 (MQ=255) tggATCGCAACAACAATATCGTTCTGGAATATCGCAAAAAAGAACTGGTTCGCCTGCCCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCAATAACGTCGAAGCCACCACCCTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAAcc > 2:241558/1‑251 (MQ=255) ggAATATCGCAAAAAAGAACTGGTTCGCCTGACCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTc < 2:118091/250‑1 (MQ=255) gAATATCGCAAAAAAGAACTGGTTCGCCTGACCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCAc > 1:241805/1‑251 (MQ=255) atatCGCAAAAAAGAACTGGTTCGCCTGACCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCAcc‑g > 2:94517/1‑251 (MQ=255) ccccGGGACAGGGAAGTAAGGAGAAGTGAAATCACTGGTTTCGTCTCTACAAACCAAATATGCCCTGAAGGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CCCCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACata < 2:258876/251‑3 (MQ=255) tGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGcc > 2:67174/1‑249 (MQ=255) gCCCTGAAAGTCTATAACGGCGAAGCCCCCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTa < 1:139430/250‑1 (MQ=255) aaaGGCTATAACGCCGAAGCCACCGCACTGCAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCAGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAAAAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGAACCCAAAc > 1:260004/1‑251 (MQ=255) cTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTg > 1:292938/1‑250 (MQ=255) tataACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGa > 1:66850/1‑250 (MQ=255) aCGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACATGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAAcgcg > 1:120240/1‑251 (MQ=255) aCCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTc > 1:52981/1‑251 (MQ=255) tGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAACCATTGAACGCGGATTCCAATTCAACCGcc > 2:54319/1‑251 (MQ=255) gggCAAGGTGGTC‑CAACGGGGTAAAGATATTCGGGTTACCC‑GCCCGTTTTCCGGTTTCCCCAGCCCGCCA‑AAACCGAATAACCCGGGGCCGTTTGA‑GTCCCCCGCGGAAGATGTCAAAGGCATTTTTTCGAATGGTAACCAGACCATGGTGGTCTTCCAGGCACCTACCCTAGGCCAGAAAGATTCCTCGGTATGGTTAAGTCCCCAAACATTGACCGGGGTTTCCCATTCAACCGCCACACTGACTTTTa < 1:147026/250‑1 (MQ=255) gCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAGGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTAtt > 1:261243/1‑251 (MQ=255) cAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTcc < 2:135275/184‑1 (MQ=255) cAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTcc > 1:135275/1‑184 (MQ=255) tCACAACGGA‑TAAAGATATTCTGGTTACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTATTGCGCatgat > 2:116606/1‑251 (MQ=255) aaGATATTCTGGTTACCCTGCCGGGTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTATTGCGCATGATGCAGCAGGTAAt > 1:249558/1‑251 (MQ=255) ggTTACCCGGCCGGTTTACCGTTT‑CACCAGTCCCCAAGAACCCGA‑TACCCCCGGGCGGATGGAAGCCCCC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGGCGTTCAGGCCCCTACGCAAAGCCAGAAAGATTCCTCGGTATCGTAAAGTCCCAAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTATTGCGCATGATGCAGCAGGTAATCCTGTTGTc < 1:54319/250‑1 (MQ=255) ttACCCTGCCGGTTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTATTGCGCATGATGCAGCAGGTAATCCTGTTGTCggg > 2:173374/1‑251 (MQ=255) | GCAGGCAGCCGTTATGATCTGGTGGATCGCAACAACAATATCGTTCTGGAATATCGCAAAAAAGAACTGGTTCGCCTGACCCTGACAGACCCCGTGACAGGGAAGTCAGGAGAAGTGAAATCACTGGTTTCGTCGCTACAAACCAAATATGCCCTGAAAGGCTATAACGTCGAAGCCACCGCACTGGAAGCTGCCGGTGGCAAAGTGGTCACAACGGG‑TAAAGATATTCTGGTTACCCTGCCGGCTTACCGGTT‑CACCAGTACGCCAGAAACCGA‑TAACACCTGGCCGATTGAAGTCACC‑GCCGAAGATGTCAAAGGCAATTTGTCGAATCGTGAACAGAGCATGGTGGTCGTTCAGGCACCTACGCTAAGCCAGAAAGATTCCTCGGTATCGTTAAGTACCCAAACATTGAACGCGGATTCCCATTCAACCGCCACACTGACTTTTATTGCGCATGATGCAGCAGGTAATCCTGTTGTCGGG > NC_000913/2046159‑2046641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |