| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,008,395 | C→T | A40V (GCT→GTT) | yedE → | putative selenium transporter YedE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,008,395 | 0 | C | T | 87.0% | 60.1 / ‑4.9 | 23 | A40V (GCT→GTT) | yedE | putative selenium transporter YedE |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (11/9); minor base G (2/1); total (13/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
GCCTTTCAAGGTTCAGAGAGAAATTTGATCTAACTATTATTTTTGTGAATTATTACCCCGAAAATAAATTTGCATGGTGTATGATTCGCGACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGCTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGAATGCCGCGCAGCCGTATCCGCATTATGCAGGCCATCATTGGCGGCATT > NC_000913/2008148‑2008636 | gCCTTTCAAGGTTCAGAGAGAAATTTGATCTAACTATTATTTTTATGAATTATTACCCCGAAAATAAATTTGCATGGTGTATGATTCGCGACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGt < 1:213628/251‑1 (MQ=255) ataaaTTTGCTCTAACTATTATGTTTGTGAATTATTACCCCGAAAATAAATTTGCATGGTGTATGATTCGCGACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTTCTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTAccc < 1:172165/248‑1 (MQ=255) gATCTAACTATTATTTTTGTGAATGATTACCCCGAAAATAAATTTGCATGGTGTATGATTCGCGACTCGTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCAGGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGGATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTGTGGGGTGTCACGGGTGAATTTACCCGTTGGggc < 2:195155/250‑1 (MQ=255) aaCTATTATTGTTGTGAATTATTACCCCGAAAATAAATTTGCATGGTGTATGATTCGCGACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCa < 2:177518/250‑1 (MQ=255) aaatTTGCATGGTATATGATTCGCGACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTAATATTTTGGCCTTACTGGCA‑CCTTTTGGGTTGTCACGGGAGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAAATGTTCGGCGTCCATGATGAagcgt > 1:269156/1‑248 (MQ=255) gcatggggactggttcacgaatctTGTATCAAACCGTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCTATTAAAACACGCCTGGATGATTAGATTCTGGGCACCCATCCCTGAGGTCATCGCGGCGGGGTTTTTATCTTATTACTATTTTTGCATTACTTGCAACCTTTTGG‑TTGTTACGGGTGGATTTACCCGCTGTGGGGGCAAGCTCCCACTACTGTTTCGCGTCCATTCTGGAGAGGTGGGGt > 2:27235/22‑251 (MQ=255) cgcgACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTCTTTTGGCATTACTGGCA‑CCTTTTTGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCCACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGATACTTTAAAATTATcc > 1:96693/1‑251 (MQ=255) tCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTa < 2:107677/250‑1 (MQ=255) agagGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTTCTTACTATTTTGGCCTTACTGGGA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCCACTGTTTGGCGTCCCTGCTGGAGAG‑TGGGGTTTCTTTAAAATTATCCCTCTGGAAGGATCGCCATTACACCGCATCg > 1:61204/1‑251 (MQ=255) tACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTTGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGGGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCCTCTGGGAGGATCGCCCTTAACCCCCATCGACgggg > 1:6369/1‑250 (MQ=255) cattcctgtactggaagaaaTTCAAACACGCCTGGTTGATTAAATTCTCGGCCCCCATACCTGCGGTCATCGCGGCGGGGATTCTCTCTAATTACTCTTTTTGCATTAATGGCA‑CCTTTTTGGTTGTTACGGGGGAATTTCCACGATGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGTG‑TGGGGTTACTTTAAACTTATCCCTCTGGACGGATCGCCATTAACCCGCATCGACggggtg > 2:311718/19‑248 (MQ=255) aTTCAAACACGCCTTGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTTGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTg < 1:23817/251‑1 (MQ=255) aTTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCGTCTTACTATGTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGttgg < 1:23816/251‑3 (MQ=255) acacGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTCCTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGgct < 2:6369/251‑1 (MQ=255) gATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGGTGTCAAGGGGGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGGAGAG‑TGGGGGTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGccg > 1:246589/1‑249 (MQ=255) gggCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTTGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCCGCCCCTGCAACTGTTCGGCGTCCATGCTGGAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGGTGATGATCCTCGGTATGTTTGGCGGCTGCTTTTCCGCAGCGCTGTGGGcc > 1:245699/1‑251 (MQ=255) gggCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTgg < 1:115353/248‑1 (MQ=255) gCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCC‑CCTTTTGGGGTGTCCCGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTTCAACTGTTCGGCGTCCATGCTGAAGAG‑GGGGGGTACTTTTAAATTATCCATCTGGGAGGATCGCCATTAAACCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCCGCGCTGGGGGCca > 2:73952/1‑250 (MQ=255) gTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGAATGCCGCGCAGc > 2:83103/1‑251 (MQ=255) ctctACTTACTATTTTGCCATTACTGGAC‑CCTTTTGGTTTGTCACGGGTGCATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAACATTATCCATCTGGCAGGCTCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGTCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGACTGCCGCGCAACCGTATcc > 2:143810/1‑251 (MQ=255) tactATTTTGGCATTACTGGCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGAATGCCGCGCAGCCGTATCCGCATTAt > 2:60228/1‑251 (MQ=255) ggCA‑CCTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGAATGCCGCGCAGCCGTATCCGCATTATGCAGGCCATCATTggcgg < 1:304469/251‑1 (MQ=255) cTTTTGGGTTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGAATGCCGCGCAGCCGTATCCGCATTATGCAGGCCATCATTGGCGGCAtt > 1:323865/1‑250 (MQ=255) | GCCTTTCAAGGTTCAGAGAGAAATTTGATCTAACTATTATTTTTGTGAATTATTACCCCGAAAATAAATTTGCATGGTGTATGATTCGCGACTCTTGTTTCAAACCTTCTGAGTTCAGAGGCTACATTCATGTCATGGCAGCAATTCAAACACGCCTGGTTGATTAAATTCTGGGCCCCCATCCCTGCGGTCATCGCGGCGGGTATTCTCTCTACTTACTATTTTGGCATTACTGGCA‑CCTTTTGGGCTGTCACGGGTGAATTTACCCGTTGGGGCGGCCAGCTCCTGCAACTGTTCGGCGTCCATGCTGAAGAG‑TGGGGTTACTTTAAAATTATCCATCTGGAAGGATCGCCATTAACCCGCATCGACGGGATGATGATCCTCGGTATGTTTGGCGGCTGCTTTGCCGCAGCGCTGTGGGCCAACAATGTCAAACTGCGAATGCCGCGCAGCCGTATCCGCATTATGCAGGCCATCATTGGCGGCATT > NC_000913/2008148‑2008636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |